PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aqcoe5G389300.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
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Family | GATA | ||||||||
Protein Properties | Length: 380aa MW: 41806.5 Da PI: 8.1529 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 58.1 | 1.2e-18 | 208 | 242 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C nC+tt Tp+WR gpdg+ktLCnaCG++ +kk++ Aqcoe5G389300.1.p 208 CLNCKTTRTPQWRDGPDGPKTLCNACGIRLKKKRM 242 99******************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57716 | 5.23E-14 | 200 | 242 | No hit | No description |
SMART | SM00401 | 5.8E-16 | 202 | 252 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 3.3E-16 | 206 | 242 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 1.33E-14 | 207 | 245 | No hit | No description |
Pfam | PF00320 | 5.8E-16 | 208 | 241 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 12.387 | 208 | 238 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS51525 | 14.571 | 299 | 379 | IPR027353 | NET domain |
Pfam | PF17035 | 2.0E-16 | 308 | 370 | IPR027353 | NET domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 380 aa Download sequence Send to blast |
MDKVIESSAV MPELSGSSVP HGEPQVGPSS FAYHFHEIKE LFSQKEDLFP PASKNSVLFP 60 KTSATVNDDD IHLKSEQVVG PSVSRTLFLN GVGDGFPDIK KGKLQTCLKQ SVTVFSQEVD 120 EMLESVLEMC KIKKHLINKE LLANDPSSAA GVIQSSPSKK QKLSSSPSSS GDTTHVGTKG 180 SQSRDRASSF GDIGSSEESQ SRGLTKICLN CKTTRTPQWR DGPDGPKTLC NACGIRLKKK 240 RMSPLGANEA NKKLKQEDDD DLRIILESSG SLAKEAVKKY SDEMFGKLGD MEQQLEKCLD 300 VIMSKCRKMA HPEKQQLRKL IQNLPPKNLD RVVDIIVKHR KSSEGPCSEI HINLENEDNG 360 TLWRLYYYVE AVARASNLS* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010248715.1 | 1e-105 | PREDICTED: uncharacterized protein LOC104591545 isoform X1 | ||||
Refseq | XP_010248716.1 | 1e-105 | PREDICTED: uncharacterized protein LOC104591545 isoform X1 | ||||
Refseq | XP_010248717.1 | 1e-105 | PREDICTED: uncharacterized protein LOC104591545 isoform X1 | ||||
TrEMBL | A0A2G5E719 | 0.0 | A0A2G5E719_AQUCA; Uncharacterized protein | ||||
STRING | Aquca_011_00414.1 | 0.0 | (Aquilegia coerulea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G08000.2 | 5e-16 | GATA transcription factor 10 |
Link Out ? help Back to Top | |
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Phytozome | Aqcoe5G389300.1.p |