PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe5G379700.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family ARR-B
Protein Properties Length: 575aa    MW: 64484.2 Da    PI: 6.2047
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe5G379700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like75.38.4e-24200253155
            G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                        k+r++W+ +LH++Fv+av+ + G +k  Pk+il+lm+v+ Lt+e+v+SHLQkYRl
  Aqcoe5G379700.1.p 200 KTRVVWSVDLHQKFVNAVNLI-GLDKVGPKKILDLMNVPWLTRENVASHLQKYRL 253
                        68*****************99.********************************8 PP
2Response_reg72.71.5e-24191271109
                        EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHH CS
       Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedaleal 90 
                        vl+vdD+p+ +++l+++l+k  y ev+++  + + l++l++++  +D+++ D++mp+mdG++ll++   e  +lp+i+++  ge + + + +
  Aqcoe5G379700.1.p  19 VLVVDDDPTWLKILEKMLKKCSY-EVTTCCLAIDGLDILRKRKdrFDIVISDVNMPDMDGFKLLEHVGLEM-NLPVIMMSVDGEISRVMKGV 108
                        89*********************.***************887778**********************7654.8******************* PP

                        HTTESEEEESS--HHHHHH CS
       Response_reg  91 kaGakdflsKpfdpeelvk 109
                          Ga d+l Kp+ ++el +
  Aqcoe5G379700.1.p 109 LHGACDYLLKPIRMKELQN 127
                        **************99976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23004.9E-4116153No hitNo description
SuperFamilySSF521726.83E-3416140IPR011006CheY-like superfamily
SMARTSM004482.3E-2917129IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011040.72418133IPR001789Signal transduction response regulator, receiver domain
PfamPF000728.1E-2219127IPR001789Signal transduction response regulator, receiver domain
CDDcd001568.11E-2820133No hitNo description
Gene3DG3DSA:1.10.10.601.5E-26198258IPR009057Homeodomain-like
SuperFamilySSF466896.45E-17198257IPR009057Homeodomain-like
TIGRFAMsTIGR015577.8E-22200253IPR006447Myb domain, plants
PfamPF002491.6E-6202252IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 575 aa     Download sequence    Send to blast
MENGFVSSRN DTFPAGLRVL VVDDDPTWLK ILEKMLKKCS YEVTTCCLAI DGLDILRKRK  60
DRFDIVISDV NMPDMDGFKL LEHVGLEMNL PVIMMSVDGE ISRVMKGVLH GACDYLLKPI  120
RMKELQNIWQ HVLRKKIHEV KDMEIHEGSE GVQHMKSNLD GFDDSYLLAG GDLASSRKRK  180
DLENQELDDQ DFSDASAAKK TRVVWSVDLH QKFVNAVNLI GLDKVGPKKI LDLMNVPWLT  240
RENVASHLQK YRLYLSRLQK QSQPSFGTTK QPDFSSMDPS SSFGLQNSTV MHQNNATSCS  300
YGHSGNKMLV QDVSPEIQEV NSKVGFPVLP VIEPQKALIV DVPFIHKVDS SSRMALPTSC  360
KSSTNVNYTL VEPETPQHHP WGGDGPMIQF TQQPKEDHKP ARYMSGPKHH IQPDFMQPVS  420
AINLGTSMNT MAKAGTSEMT PLSTVYANNH ARILSPRPHT VSVQAQTNSV DTEVFDSICT  480
RIISQRTKSE KNFDHCGRSS WETPQQKFSV GNEPLQDHGY IENVGFNGLE FSDYLDPELV  540
TDLPSHMHDG LGFNSDYLFD SIEYPTISQG LFIT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A2e-17196258163ARR10-B
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010248808.10.0PREDICTED: two-component response regulator ORR26-like isoform X1
TrEMBLA0A2G5E6Q00.0A0A2G5E6Q0_AQUCA; Uncharacterized protein
STRINGAquca_011_00344.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67710.11e-114response regulator 11