PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe5G354600.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family FAR1
Protein Properties Length: 775aa    MW: 89750.8 Da    PI: 8.1623
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe5G354600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR182.66.6e-2663151190
               FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 
                        +fYn YA  vGFsvrks++++s+ ++eit rtf+Cs +g r++++k+ e++ r+ + +rtgCka++ ++k++  +kw vt +++ HnH l+
  Aqcoe5G354600.1.p  63 NFYNCYA--VGFSVRKSSTYRSRITKEITGRTFCCSLQGLRDSRSKNFEEKMRNATDSRTGCKAMMAIRKNTgGEKWIVTIVVEAHNHILV 151
                        4777776..9**************************************************************99**************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.7E-2263151IPR004330FAR1 DNA binding domain
PfamPF105513.7E-32273367IPR018289MULE transposase domain
PROSITE profilePS5096610.324552590IPR007527Zinc finger, SWIM-type
PfamPF044342.7E-7564586IPR007527Zinc finger, SWIM-type
SMARTSM005753.9E-5565592IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 775 aa     Download sequence    Send to blast
MVENGCGHEG ESSEINYNST NLDDIQEKID EIINDDDKKD EENTNGYCPC IGMEFDSEDD  60
AYNFYNCYAV GFSVRKSSTY RSRITKEITG RTFCCSLQGL RDSRSKNFEE KMRNATDSRT  120
GCKAMMAIRK NTGGEKWIVT IVVEAHNHIL VTPTKRYLLR SQRKMEPIQK KMADDMRSVG  180
IRTSLMVDFL ASEAGGIQNV GFTRKDVNNY LSAKRQKELL DGDAQALLDH LQQQQLDNPS  240
FSYSIQVDSD GRMTNFFWAD ARSRMDYHYF GDVVCFDPTY GTNRYPMPFV PIVGVNHHSQ  300
TVLFGGALLY SETEESFEWV MRTWMNAMND KQPKVILTDQ ESSIGGAIAR VLPESRHRFC  360
VWHINRNALK HLAHEINKHK GFLEDLNYCL YQYKTVEEFE NAWNKMLEKY RLEDNKWLES  420
LFRKREKWAS VYACDIFCVG MYTTQMSESI NSYFDRYLKR GLSLSEFMRQ YERAVVARRE  480
EENMADYNTN YHRPLLRVLM KIEKEGAKVY TKTMFYKFQE PLFKGLSYRH RKVEENETRL  540
IYNVWKEGHE DVARTIMFEP STTSAKCSCQ LFEFGGYLCR HILKVFMVED FENLAEQYIF  600
KRWTKDAKSG LVVSSENKSN QVKLEESVTS RYCGICQEGV NIASKPSPYI EVFNVAKEGE  660
RVESDQNGEV NATSVQLDIQ KPLLDPPIKK HKGRNPGRKL PWFEKGGKKK KKVQIICPLM  720
STFLINQISK GTCKHKSASI DVNKFYECAP SKDGGLTERR HRTRVWNSSN CSGF*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010245233.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 5-like isoform X1
RefseqXP_010245234.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 5-like isoform X1
TrEMBLA0A1U7YZY60.0A0A1U7YZY6_NELNU; protein FAR1-RELATED SEQUENCE 5-like isoform X1
STRINGXP_010245233.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-139FAR1-related sequence 5