PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe5G340400.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family B3
Protein Properties Length: 334aa    MW: 38451.4 Da    PI: 6.246
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe5G340400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B358.31.4e-18123221297
                        EEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS.-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
                 B3   2 fkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesg.rsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                        +k+l+psdv +++r++lpk+ ae++  ++ ++e++ ++++d+++ r W+++++y  +++s++y+l+ ++  Fv a++L+ gDfv+++  +++
  Aqcoe5G340400.1.p 123 QKQLKPSDVCAHSRIILPKRAAEAFlpMLMSKEGMIIRMNDTNNlRYWTFRYRYwpNNNSRMYILE-NTAAFVMAHNLEIGDFVMLYK-DDQ 212
                        79*************************55566899******8877*********888888888888.********************3.337 PP

                        EE..EEEEE CS
                 B3  89 efelvvkvf 97 
                        + e++++ +
  Aqcoe5G340400.1.p 213 NNEYFIRGR 221
                        777777766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.3E-24115223IPR015300DNA-binding pseudobarrel domain
CDDcd100171.48E-21120222No hitNo description
SuperFamilySSF1019364.19E-19121217IPR015300DNA-binding pseudobarrel domain
SMARTSM010193.8E-11122224IPR003340B3 DNA binding domain
PROSITE profilePS508639.432122224IPR003340B3 DNA binding domain
PfamPF023623.2E-15123220IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MKIEQMIPKN HSDFSNVVPV HRGNNINLNL DSFSSNLNPK PQRNFVFTES TTSHETKPNK  60
RMRGCHCETN NGCGSSSCNA IFAPVLLHIP DLNLSSSSPA VPTYPFALIQ PDFDAKRLRF  120
LLQKQLKPSD VCAHSRIILP KRAAEAFLPM LMSKEGMIIR MNDTNNLRYW TFRYRYWPNN  180
NSRMYILENT AAFVMAHNLE IGDFVMLYKD DQNNEYFIRG RKAGDPVGQF DYRKQQETKF  240
QLFPDDLEMK RYSHEKNMYN ALVCEENDED LEETSCFGED DDEFNDTGDD QTEVELFKDH  300
LYVGKDTIVA PINKKKKNLG SLRQVNSITM EAS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9b_A2e-411182251108B3 domain-containing transcription factor FUS3
6j9b_D2e-411182251108B3 domain-containing transcription factor FUS3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26790.12e-36B3 family protein