PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aqcoe5G338800.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
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Family | ARF | ||||||||
Protein Properties | Length: 846aa MW: 94200.4 Da PI: 6.4507 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 71.8 | 8.5e-23 | 148 | 249 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 f+k+lt sd++++g +++ +++a+e+ +++++ +l+ +d++g +W++++i+r++++r++l++GW+ Fv++++L +gD ++F Aqcoe5G338800.1.p 148 FCKTLTASDTSTHGGFSVLRRHADEClppldmcRQPPTQ--ELVAKDLHGIEWKFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFL-- 235 99*****************************87555544..8************************************************.. PP SSSEE..EEEEE-S CS B3 86 grsefelvvkvfrk 99 + +++el+v+v+r+ Aqcoe5G338800.1.p 236 RGENGELRVGVRRA 249 449999*****985 PP | |||||||
2 | Auxin_resp | 119.3 | 3e-39 | 274 | 356 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 a+ha+st+++F+v+Y+Pr+s++eF+v+++++++++k+ +s+GmRfkm+fe+e+++e+r++Gt+vg+ d+d+ rW++SkWr+Lk Aqcoe5G338800.1.p 274 AWHAVSTGTMFTVYYKPRTSPAEFIVPYDQYMESVKNTYSIGMRFKMRFEGEEAPEQRFTGTIVGMGDADSNRWHDSKWRCLK 356 89*******************************************************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 5.89E-40 | 141 | 277 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 3.0E-40 | 141 | 263 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.41E-21 | 146 | 248 | No hit | No description |
PROSITE profile | PS50863 | 11.462 | 148 | 250 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.4E-20 | 148 | 249 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 5.7E-22 | 148 | 250 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 9.4E-37 | 274 | 356 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 2.7E-12 | 704 | 810 | IPR033389 | AUX/IAA domain |
PROSITE profile | PS51745 | 26.02 | 721 | 805 | IPR000270 | PB1 domain |
SuperFamily | SSF54277 | 7.85E-13 | 722 | 798 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008285 | Biological Process | negative regulation of cell proliferation | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009911 | Biological Process | positive regulation of flower development | ||||
GO:0010047 | Biological Process | fruit dehiscence | ||||
GO:0010150 | Biological Process | leaf senescence | ||||
GO:0010227 | Biological Process | floral organ abscission | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0048481 | Biological Process | plant ovule development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 846 aa Download sequence Send to blast |
MATSEISSKN GRGESCYSSG NDGGGKAMNG GFSNYKGSEE ALYTELWHAC AGPLVTVPRE 60 GERVFYFPQG HIEQVEASTN QVADKQMPVY NLRSKILCRV INVELKAEPD TDEVFAQVTL 120 LPEDNQDENA VEKEPSPPPP PRPHVHSFCK TLTASDTSTH GGFSVLRRHA DECLPPLDMC 180 RQPPTQELVA KDLHGIEWKF RHIFRGQPRR HLLQSGWSVF VSSKRLVAGD AFIFLRGENG 240 ELRVGVRRAL RQQSNVPSSV ISSHSMHLGV LATAWHAVST GTMFTVYYKP RTSPAEFIVP 300 YDQYMESVKN TYSIGMRFKM RFEGEEAPEQ RFTGTIVGMG DADSNRWHDS KWRCLKVRWD 360 ETSSVPRPER VSPWKIEPAM APALNTLPIS RPKRPRAVAA SPDSSVLTKE GSSKITIDSA 420 SVNGFSRVLQ GQETSTLKNS LSENNESESV QRPVTWPPSQ DDGKIDMVCG QNRYGTENWA 480 PMVRHEPTYT DLLSGFRSSN DSPHALATSF SERNIEDTNP LKKQWQDSEG KLVALPWSMM 540 PPSQSMNTLD SDMKIHSQAN EISYPKAGTK YNAFSGYPVL QNIRVEQHEG NWMMPLLSSP 600 HSETLHHPRG IRPQPSYFQQ HEVSKSKTNG NCKLFGIPLN VNPVVPEPAA PHGNVPYEPE 660 NHITSALPPQ KALDSDHQSE QSKASKSTDT AVLGNEQEKS TPGCQQQRRD VKSKLQGGST 720 RSCTKVHKQG IALGRSVDLT KFSGYDELLT ELDQMFDFDG ELMAHSKIWQ VVYTDNEGDM 780 MLVGDDPWQE FCSMVRKIFI YTREEVQKMT PGALNARAED NPTNAEERTG EQETSCAAAA 840 SPENC* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldv_A | 1e-179 | 15 | 378 | 4 | 354 | Auxin response factor 1 |
4ldw_A | 1e-179 | 15 | 378 | 4 | 354 | Auxin response factor 1 |
4ldw_B | 1e-179 | 15 | 378 | 4 | 354 | Auxin response factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs) (By similarity). Could act as transcriptional activator or repressor (PubMed:26959229, PubMed:26716451, PubMed:27645097, PubMed:28167023). Involved in the control of fruit ripening process (PubMed:26959229, PubMed:26716451, PubMed:28167023). Regulates expression of a number of ripening regulators, transcription factors, and ethylene biosynthesis and signaling components (PubMed:26959229, PubMed:26716451). May act as a transcriptional repressor of auxin-responsive genes (PubMed:26716451). Regulates vegetative growth, lateral root formation and flower organ senescence, possibly partially by regulating gene expression of auxin and ethylene response factor (ERF) genes (PubMed:28167023). Plays a negative role in axillary shoot meristem formation (PubMed:27645097). {ECO:0000255|RuleBase:RU004561, ECO:0000269|PubMed:26716451, ECO:0000269|PubMed:26959229, ECO:0000269|PubMed:27645097, ECO:0000269|PubMed:28167023}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00574 | DAP | Transfer from AT5G62000 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By tomato fruit ripening. Expression in tomato fruits is up-regulated by exogenous application of ethylene and down-regulated by inhibition of ethylene receptors with 1-methylcyclopropene (1-MCP) (PubMed:26959229, PubMed:26716451). Up-regulated by plant hormone abscisic acid (ABA) in tomato fruits (PubMed:26959229). Expression is not up-regulated by plant hormone auxin in tomato fruits (PubMed:26716451). Up-regulated by auxin and gibberellic acid (GA), and down-regulated by ethylene in seedlings (PubMed:28167023). Down-regulated during decapitation-induced axillary shoot development and by excision of immature leaves. Down-regulation is inhibited by the application of auxin on the cut surface (PubMed:27645097). {ECO:0000269|PubMed:26716451, ECO:0000269|PubMed:26959229, ECO:0000269|PubMed:27645097, ECO:0000269|PubMed:28167023}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010249209.1 | 0.0 | PREDICTED: auxin response factor 2-like | ||||
Swissprot | Q2LAJ3 | 0.0 | ARF2A_SOLLC; Auxin response factor 2A | ||||
TrEMBL | A0A2G5C474 | 0.0 | A0A2G5C474_AQUCA; Auxin response factor | ||||
STRING | Aquca_100_00036.1 | 0.0 | (Aquilegia coerulea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G62000.3 | 0.0 | auxin response factor 2 |
Link Out ? help Back to Top | |
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Phytozome | Aqcoe5G338800.1.p |
Publications ? help Back to Top | |||
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