PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aqcoe5G335900.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
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Family | ERF | ||||||||
Protein Properties | Length: 280aa MW: 31126.3 Da PI: 4.9327 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58.9 | 1.3e-18 | 43 | 92 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++ GVr+++ +gr+++eIrdps+ + r++lg+f+taeeAa a+++a+++++g Aqcoe5G335900.1.p 43 KFLGVRRRP-WGRYASEIRDPST---KERHWLGTFDTAEEAALAYDKAARSMRG 92 577******.**********965...5*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 8.3E-35 | 43 | 106 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.11E-30 | 43 | 99 | No hit | No description |
PROSITE profile | PS51032 | 20.389 | 43 | 100 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.3E-29 | 43 | 100 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.42E-20 | 44 | 101 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 3.5E-8 | 44 | 55 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 7.9E-11 | 46 | 92 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.5E-8 | 66 | 82 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0010030 | Biological Process | positive regulation of seed germination | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 280 aa Download sequence Send to blast |
MDFNGIATNS SSSPMFIQEK KKKGKKNQQQ QQQQQQETTT TIKFLGVRRR PWGRYASEIR 60 DPSTKERHWL GTFDTAEEAA LAYDKAARSM RGTKARTNFI YSDMPHGSSV TSLISPDQPT 120 QHDFSPLLVP PPQQNDSSSN VQLFFSQDSS NMDHSAEGGF SDSQSWIPAT FSQQQQQQHP 180 IMFSSSSSGF HNQVNEEIQL PPLPCELSDI GVSDYDMGHG GWMDTSFLGY PEQSLGLEPV 240 WSGSNEFVHS PLFGQMPPVS DSVPSIMDHL DLGSSAYFF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 2e-19 | 44 | 99 | 3 | 59 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00509 | DAP | Transfer from AT5G13910 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010250477.2 | 1e-84 | PREDICTED: ethylene-responsive transcription factor LEP-like | ||||
TrEMBL | A0A2G5DCT4 | 0.0 | A0A2G5DCT4_AQUCA; Uncharacterized protein | ||||
STRING | Aquca_022_00029.1 | 0.0 | (Aquilegia coerulea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G13910.1 | 2e-39 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Aqcoe5G335900.1.p |