PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe5G327800.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family LFY
Protein Properties Length: 394aa    MW: 44237.9 Da    PI: 7.6201
Description LFY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe5G327800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FLO_LFY549.79.7e-16813841385
            FLO_LFY   1 mdpeafsas.lfkwdpraaaaapp...arllee.aavseapleaaaaaaark.lr.......eleelfkayGvryltvakiaelGftvstLv 79 
                        mdpeafsa+ l+kw+++aaaaa+p   +rl+ e +a++++p   + +  ++  +r       +le++f+ yG+ry+ +akiaelGftvstL+
  Aqcoe5G327800.1.p   1 MDPEAFSAAsLYKWERAAAAAAAPqhhHRLQFEpMALPPSPPPPQPSLPSYCvTRpprelllTLEDFFQPYGIRYTMIAKIAELGFTVSTLL 92 
                        9****987669****77777555534433333303333333223333333321335567778****************************** PP

            FLO_LFY  80 dmkdeelddlmkslseifrldllvGeryGikaavraerrrleeeeaekkrrkllsedeetaldalsqeglseepvqeekeaagsggeglgea 171
                        dm+deeld++m +ls+i rldllvGe+yGikaa+raerrr +             +++++ ldalsq glseepv  +keaagsgg++   +
  Aqcoe5G327800.1.p  93 DMRDEELDEMMITLSQIVRLDLLVGEKYGIKAAIRAERRRYHVLLGGGAAG-GHVDNTTNPLDALSQGGLSEEPV--MKEAAGSGGGT---W 178
                        ****************************************99955333333.33567788**************9..56799998877...9 PP

            FLO_LFY 172 elvaaeekkseeekkkaskkkqkrkkkkelkseededeeeeededeegsgedgeerqrehPfivtepgevargkknGLDYLfdLyeqCrefL 263
                        ++v a ek    +kkk++++++++ +++     +++ ++e+++ed  g++  g++rqrehPf+vtepgevargkknGLDYLf+Lye+Cr++L
  Aqcoe5G327800.1.p 179 DMVSAGEK----RKKKNKAQRSRKARNSG----DENYDDEDDEEDAAGERGCGRHRQREHPFVVTEPGEVARGKKNGLDYLFHLYEECRQYL 262
                        99999843....22332222233333222....333344445556667777799************************************** PP

            FLO_LFY 264 lqvqkiakerGekcPtkvtnqvfryakkagasyinkPkmrhYvhCYalhcLdeeasnalrrafkergenvGawrqacykplvaiaarqgwdi 355
                        +qvq+iak+rGekcPtkvtnqv+r+a +aga++inkPk+rhYvhCYalhcLdeeasnalr+afk+rgenvGawrqacy+plv+ a+++ +di
  Aqcoe5G327800.1.p 263 IQVQNIAKDRGEKCPTKVTNQVYRHAIQAGATHINKPKIRHYVHCYALHCLDEEASNALRKAFKDRGENVGAWRQACYEPLVKFASDHHYDI 354
                        ******************************************************************************************** PP

            FLO_LFY 356 davfnahprLsiWYvPtkLrqLChlerska 385
                        d +fn hprLsiWYvPtkLr+LCh++r++ 
  Aqcoe5G327800.1.p 355 DCIFNDHPRLSIWYVPTKLRKLCHAQRNNV 384
                        ***************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF016988.6E-1711384IPR002910Floricaula/leafy protein
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010077Biological Processmaintenance of inflorescence meristem identity
GO:0010582Biological Processfloral meristem determinacy
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0031490Molecular Functionchromatin DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0043621Molecular Functionprotein self-association
Sequence ? help Back to Top
Protein Sequence    Length: 394 aa     Download sequence    Send to blast
MDPEAFSAAS LYKWERAAAA AAAPQHHHRL QFEPMALPPS PPPPQPSLPS YCVTRPPREL  60
LLTLEDFFQP YGIRYTMIAK IAELGFTVST LLDMRDEELD EMMITLSQIV RLDLLVGEKY  120
GIKAAIRAER RRYHVLLGGG AAGGHVDNTT NPLDALSQGG LSEEPVMKEA AGSGGGTWDM  180
VSAGEKRKKK NKAQRSRKAR NSGDENYDDE DDEEDAAGER GCGRHRQREH PFVVTEPGEV  240
ARGKKNGLDY LFHLYEECRQ YLIQVQNIAK DRGEKCPTKV TNQVYRHAIQ AGATHINKPK  300
IRHYVHCYAL HCLDEEASNA LRKAFKDRGE NVGAWRQACY EPLVKFASDH HYDIDCIFND  360
HPRLSIWYVP TKLRKLCHAQ RNNVASTSNS ASF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2vy1_A1e-972233832162PROTEIN LEAFY
2vy2_A1e-972233832162PROTEIN LEAFY
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1186197RKKKNKAQRSRK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00095SELEXTransfer from AT5G61850Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ1733350.0HQ173335.1 Aquilegia formosa LEAFY-like protein (LFY) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022892046.11e-161protein ALF
SwissprotO040641e-157FLLH_POPTR; Floricaula/leafy homolog
TrEMBLA0A2G5CNG60.0A0A2G5CNG6_AQUCA; Uncharacterized protein
STRINGAquca_043_00044.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61850.11e-130floral meristem identity control protein LEAFY (LFY)
Publications ? help Back to Top
  1. Tuskan GA, et al.
    The genome of black cottonwood, Populus trichocarpa (Torr. & Gray).
    Science, 2006. 313(5793): p. 1596-604
    [PMID:16973872]