PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aqcoe5G293900.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
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Family | SBP | ||||||||
Protein Properties | Length: 1029aa MW: 114673 Da PI: 7.245 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 130.5 | 5.9e-41 | 167 | 244 | 1 | 78 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqv++C+adls+ak+yhrrhkvCe+hsk++++lv ++ qrfCqqCsrfh l+efDe+krsCrrrLa+hn+rrrk+++ Aqcoe5G293900.1.p 167 VCQVDNCDADLSNAKDYHRRHKVCEMHSKSTKALVGNVLQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNRRRRKTHP 244 6**************************************************************************976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 9.1E-33 | 162 | 229 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 32.24 | 165 | 242 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 6.02E-38 | 166 | 247 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 1.1E-29 | 168 | 241 | IPR004333 | Transcription factor, SBP-box |
Gene3D | G3DSA:1.25.40.20 | 3.2E-6 | 796 | 925 | IPR020683 | Ankyrin repeat-containing domain |
SuperFamily | SSF48403 | 1.12E-5 | 805 | 911 | IPR020683 | Ankyrin repeat-containing domain |
CDD | cd00204 | 2.53E-6 | 808 | 908 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1029 aa Download sequence Send to blast |
MEGEAQARRR FYSSGGQEFM MRGNRVDLNG EGNKKNKSSE WSLNDWNWDG HLCIATPVQQ 60 DCMATTQLIP FREEIQVAGV LSNTSSSSCS DEIIAVNGNG KGKRELEKRR RRQVDSEDYE 120 LNDESGNLTL NLGGHVYPIP DNVVVNCDGK NGKKTKISNV AASNRAVCQV DNCDADLSNA 180 KDYHRRHKVC EMHSKSTKAL VGNVLQRFCQ QCSRFHVLQE FDEGKRSCRR RLAGHNRRRR 240 KTHPETTVNG CSVDDDRSSN YLLISLIRIL SNMHSNNSDQ AKDQDLLSHL VRSLASYKST 300 TDGQNTSTIR QEYKEVVNVE APSGASSEAR LVHETSRHLG STSEINNIVD AQGSHIKTVD 360 QNMNSAPKVS EKQIVVNNFP DGVLQNSPFP TKDGPRLIAH TSDSTVGRPK FNDFDLNTVY 420 SNSEDCEGLE SLQHHVNVGN GSLGIPLWQQ KDSHQSSPPQ TSANSNSLSG QSPSSSGGDA 480 QSRTDRIVFK LFGKDPNHFP DGGLRSQILN WLSHSPTDIE SYIRPGCIIL TVYLRLAEST 540 WQELQDDLSS SLRRLLAVSD DAFWRTGWVY TRVQHHIAFI YNGQIVLDAA LPLTSHNHAR 600 IGSVTPIAVS VSEKVQFLVK GYNLSRHTAR LLCALEGKYL PQEATSDLFD SEHKEIQCLT 660 FPCSVPDITG RGFLEVEDHG LSGDFFPFIV AEQDVCLEIR TLESAVEASE FSDSLISSDK 720 MGMKNQVLNF IHEMGWLLRR SSLRSRISHS DPNSEIFPLT RFRWLMEFSM DHDWCAVVKK 780 LLDVLFDGNV GSGEYPSVEL AVLDMGLLHK AVRRRCRQMV ELLLRYVPKQ PIKKGCDRVL 840 FRPDAVGPGG LTPLHIVASS VGSDNLLDAL TDDHGLVGVK AWKTLRDDAG STPEDYAHLR 900 GHYSYINLVQ KKINKRTDTG HVVLDIPNVL AAYSSDKKQN DKQKSTKLAG FQIGKTNVRP 960 IKMQQSCIAC DQQLACRSTS LSLVYRPAMI SMLAIAAVCV CVSLLFKSSP EVMYVDSFRW 1020 EWLEFGSV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 2e-30 | 167 | 241 | 10 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00633 | PBM | Transfer from PK06791.1 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010270965.1 | 0.0 | PREDICTED: squamosa promoter-binding-like protein 1 | ||||
TrEMBL | A0A2G5D354 | 0.0 | A0A2G5D354_AQUCA; Uncharacterized protein | ||||
STRING | Aquca_029_00064.1 | 0.0 | (Aquilegia coerulea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47070.1 | 0.0 | squamosa promoter binding protein-like 1 |
Link Out ? help Back to Top | |
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Phytozome | Aqcoe5G293900.1.p |