PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe5G282100.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family GATA
Protein Properties Length: 400aa    MW: 43879.5 Da    PI: 7.6401
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe5G282100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA43.35.1e-14741135
               GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                       C +Cg t+TplWR+gp  ++ LCnaCG ++r kg+
  Aqcoe5G282100.1.p  7 CCHCGITSTPLWRNGPPEKPVLCNACGSRWRTKGT 41
                       99**************88888***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004019.5E-9155IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.8E-11546No hitNo description
CDDcd002023.36E-14653No hitNo description
PROSITE patternPS003440732IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.055740IPR000679Zinc finger, GATA-type
PfamPF003201.1E-11741IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.2E-11741IPR013088Zinc finger, NHR/GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 400 aa     Download sequence    Send to blast
MGKQGPCCHC GITSTPLWRN GPPEKPVLCN ACGSRWRTKG TLANYTPIHS RTFAPPDFGD  60
SKQSRQDKLP PSTKSKSWYI KVHNESKMED EQSSAEYYSY STYFEDDSSN KSSSGSAISV  120
SESCVQLGST DGNEISGPFQ SSFCDFQIPS RKRTRMRRHS PSPVEKLRQD LVTILQQQDS  180
SYCSDFSEEV LLFEREDLSL SSEIGHGSVL LKPPVSSKEE ESEASSHIIG NGVSSLNDLY  240
MGVSCWSGRS HNNEISSRQL GKAKVIQETW NTNEFKENKV KKLVSTNRSL KSTFSGDPDD  300
IRNKYSSQIC VNDKSLISKS SNSTREVSSL TSEVTGSGML IFAKRPCETP SSEGKSSGSM  360
NSFKRPREQS DIEITSGEAS VLIQGPSSGT KNLSALSQN*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2539570.0AC253957.1 Aquilegia coerulea clone COL03-D12, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
SwissprotQ8W4H19e-54GAT26_ARATH; GATA transcription factor 26
TrEMBLA0A2G5C7K20.0A0A2G5C7K2_AQUCA; Uncharacterized protein
STRINGAquca_082_00024.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17570.34e-56GATA transcription factor 26