PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aqcoe5G280600.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 237aa MW: 26001.6 Da PI: 4.3233 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 51.8 | 1.1e-16 | 9 | 57 | 1 | 49 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 k+ie+ + ++tfskRr+g++ KA+ELS + +va+i+fs++g+ly++ Aqcoe5G280600.1.p 9 KKIEDRQKLNITFSKRRTGLFSKAQELSNRSGDQVAIIVFSTSGRLYTF 57 689*********************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 22.862 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 2.2E-21 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 8.63E-20 | 2 | 73 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.7E-14 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.1E-17 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.7E-14 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.7E-14 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 237 aa Download sequence Send to blast |
MGRRSIEIKK IEDRQKLNIT FSKRRTGLFS KAQELSNRSG DQVAIIVFST SGRLYTFGEP 60 GVDFVLDRYI QQGGAGDDVG GTSAAADVPI DDDVGGTFAA ADVPIDDDDD DDEDDIDDND 120 VNSDDDDVIG NGPSLNDLLK ASEKLEAEMK FAGGGTDMGE ILKNKKPVLD GVNGLEAEKK 180 RGGGTRDFLI KKRPYDNNER DHQFNNPKET MSLEEVEKFN KKMKMTADRL RSKDDN* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX680222 | 0.0 | JX680222.1 Aquilegia coerulea MADS-box protein AGL61 mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | K7XWM6 | 1e-121 | K7XWM6_AQUCA; MADS-box protein AGL61 (Fragment) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 7e-19 | AGAMOUS-like 62 |
Link Out ? help Back to Top | |
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Phytozome | Aqcoe5G280600.1.p |