PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe5G252800.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family ERF
Protein Properties Length: 441aa    MW: 47980 Da    PI: 5.2619
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe5G252800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.81.8e-20231280255
                AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                        +y+GVr+++ +g+W+AeIrdp     +  +r++lg+f+tae Aa+a+++a+++++g
  Aqcoe5G252800.1.p 231 RYRGVRQRP-WGKWAAEIRDP-----HkaARVWLGTFDTAESAARAYDEAALRFRG 280
                        7********.**********7.....337************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.104.8E-33231289IPR001471AP2/ERF domain
SuperFamilySSF541711.96E-22231289IPR016177DNA-binding domain
PfamPF008472.7E-14231280IPR001471AP2/ERF domain
PROSITE profilePS5103225.607231288IPR001471AP2/ERF domain
SMARTSM003805.2E-37231294IPR001471AP2/ERF domain
PRINTSPR003671.0E-11232243IPR001471AP2/ERF domain
CDDcd000187.95E-28239290No hitNo description
PRINTSPR003671.0E-11254270IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 441 aa     Download sequence    Send to blast
MCLLKVANQG DKSDQFVRFS VQNDNKDEEE EEQQQQPQVQ QTQDQVHQSQ LLAQQQQASM  60
FSGYDQNRNR EMSAMVSALT HVVSGDQRLR SGTDWYHGHS QDFGGYVTSS TGIISGTSSI  120
SSPSSSSYSS SSGGVGGQKR SREEESGGGQ FSESVLRSFR NYGDFRASQV GGESSSGVRV  180
KEEVGSIAAT TITTTEVQPA PRDENTYYAG GGGEGSVAVN VSGGGGESRR RYRGVRQRPW  240
GKWAAEIRDP HKAARVWLGT FDTAESAARA YDEAALRFRG SRAKLNFPEN VRLRPPLPVS  300
PPATQFSISD TTATLSPLSQ THQQFLQSQQ QNVHQQQLHS SDITRDYIQY SQLLQSSGDI  360
QTQPTTLFEQ MLYSSSAPFP PSVISSSSSS SSNPSLPLFY LDQQYMGYYP PLDNIDQSDS  420
AGLPAPSWTD SGRDPPSSSG *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-24230291163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ4529651e-52HQ452965.1 Pulmonaria officinalis microsatellite Puof-08 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010261002.17e-85PREDICTED: ethylene-responsive transcription factor ABR1-like
TrEMBLA0A2G5DCC40.0A0A2G5DCC4_AQUCA; Uncharacterized protein
STRINGAquca_023_00168.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G43160.12e-17related to AP2 6