PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Aqcoe5G238000.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 232aa MW: 25732.1 Da PI: 8.3583 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 27.3 | 6.5e-09 | 26 | 72 | 2 | 51 |
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYI 51 r+ h +Er RR+ +++ + L +llP+a + + + ++iL + ++YI Aqcoe5G238000.1.p 26 RERHILAERERRKSMRELMLSLHSLLPQA---NTVRKEQSSILDEIIKYI 72 889**************************...99***************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.23E-11 | 16 | 88 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 11.992 | 24 | 75 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.2E-9 | 26 | 89 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.7E-6 | 26 | 72 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 5.79E-6 | 26 | 72 | No hit | No description |
SMART | SM00353 | 0.0024 | 30 | 81 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 232 aa Download sequence Send to blast |
MTVDDWETIS SEGKSSGSSG AQINARERHI LAERERRKSM RELMLSLHSL LPQANTVRKE 60 QSSILDEIIK YIPLVAAQLE SLQKRRDSVS LNRSNNKTAV SPTIQVSDRN SSDDSLHSSD 120 CDIKVAPEPS LSVAIRVRGD RVNVSLIDNK GTSQALLLSA ILDELEAHNL ELVSSTHCRD 180 GSKVLHHSEC KMSDGLERSP TLLKTRLQEL ACKLHTLRKS STLKRNFNQL D* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010246746.1 | 1e-101 | PREDICTED: uncharacterized protein LOC104589957 | ||||
TrEMBL | A0A2G5DE49 | 1e-164 | A0A2G5DE49_AQUCA; Uncharacterized protein | ||||
STRING | Aquca_022_00305.1 | 1e-165 | (Aquilegia coerulea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G62610.1 | 3e-08 | bHLH family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Aqcoe5G238000.1.p |