PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe5G180100.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family GATA
Protein Properties Length: 381aa    MW: 42314.8 Da    PI: 4.8074
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe5G180100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA59.64e-19304337134
               GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                        Cs+Cg+ kTp+WR gp g+ktLCnaCG+++++ +
  Aqcoe5G180100.1.p 304 CSHCGVQKTPQWRAGPLGPKTLCNACGVRFKSGR 337
                        *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004012.7E-15298352IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.332298334IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.61E-14300361No hitNo description
Gene3DG3DSA:3.30.50.101.5E-14302335IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.26E-14303360No hitNo description
PfamPF003207.5E-17304337IPR000679Zinc finger, GATA-type
PROSITE patternPS003440304329IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    Send to blast
MLHQTLPTFL STQSFSFFSS SLCSASTLSS SSSPSTSSSY QVKTEMEIVE KKALKTKMNM  60
KLTQEPVCED VWVDNVIPSD DFFVDDLLDF SKEEVFNQGD EDEEEEEEKD FLSVSEDTQN  120
ENDNENNSNG VSVKQEFGSV PGSELSVPAD DVEQLEWLSH FVEDSFTEYS LPYPEENPLG  180
KILNPKPKTL LEPETMLKES EIETSTTPFL AKGRSKRIKR KVQHFPHQLW SLGSSETSNS  240
TFSGSGSGST SSASSGSSLS CLIFNNTTPN HELLYFYDDE QPAKKNKKGV SSSEINGAQI  300
QRRCSHCGVQ KTPQWRAGPL GPKTLCNACG VRFKSGRLYP EYRPACSPTF SSEVHSNSHR  360
KVLEMRRKKE SGLAPPVQSF *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010271497.11e-85PREDICTED: GATA transcription factor 5
TrEMBLA0A2G5EJP40.0A0A2G5EJP4_AQUCA; GATA transcription factor
STRINGAquca_007_00342.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66320.27e-60GATA transcription factor 5