PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aqcoe5G176600.6.p

Organism

Aquilegia coerulea

Taxonomic ID

218851

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia

Family

BBR-BPC

Protein Properties

Length: 342aa MW: 38419.7 Da PI: 8.7254

Description

BBR-BPC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aqcoe5G176600.6.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GAGA_bind	344.9	1.9e-105	22	341	22	301
GAGA_bind 22 enlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllvensla.....salpvgvqvlsgtksi 108 + l+++ m +i+erd +++ernlalse+kaa+aerdma lqrd+al ern+al+erdn+++a +++en+++ ++p ++++s+t+ + Aqcoe5G176600.6.p 22 HALSIKFMNIISERDGALQERNLALSERKAALAERDMAILQRDTALVERNNALIERDNAIAAFEYRENATMsvtssPTCPERYGTISETRYM 113 458999***********************************************************998778877789********* PP GAGA_bind 109 dslqq.lsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesader............. 186 +++++ ++ p+l++ + ++re + +alpi+ aa+ea + +++k+++++k p+ k+a+k+ kk+++ ++ +k+ + Aqcoe5G176600.6.p 114 HHSEHgQHPPHLAEVPCHARELHFADALPIQAAASEAVKPQRNKRTKSNKPPLFKRASKPSKKGKTVGEDLNKHLPVAEpnkwkmdhgrggc 205 995555**********************************************99998887766655543222234799**** PP GAGA_bind 187 ..........skaekksidlvlngvs...........lDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiag 257 e+k++dl+ln+ +D+s++PvPvCsCtGal+qCYkWG+GGWqSaCCttt+S+yPLP+++++r+aR++g Aqcoe5G176600.6.p 206 gedlnkelalPEVEWKDQDLGLNHYMhhsehgqsrqiFDDSAMPVPVCSCTGALQQCYKWGTGGWQSACCTTTMSIYPLPMMPNKRHARVSG 297 ****99899*****9753223333334449************************************************** PP GAGA_bind 258 rKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301 rKmS++af+klL++La eGydls pvDLkdhWA+HGtn+++ti+ Aqcoe5G176600.6.p 298 RKMSGSAFTKLLSRLAIEGYDLSVPVDLKDHWARHGTNRYITIK 341 *****************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01226	1.1E-119	1	341	IPR010409	GAGA-binding transcriptional activator
Pfam	PF06217	3.5E-87	10	341	IPR010409	GAGA-binding transcriptional activator

Sequence ? help Back to Top
Protein Sequence Length: 342 aa Download sequence Send to blast
MVDTNRISTE WLIPSHLMKD QHALSIKFMN IISERDGALQ ERNLALSERK AALAERDMAI 60 LQRDTALVER NNALIERDNA IAAFEYRENA TMSVTSSPTC PERYGTISET RYMHHSEHGQ 120 HPPHLAEVPC HARELHFADA LPIQAAASEA VKPQRNKRTK SNKPPLFKRA SKPSKKGKTV 180 GEDLNKHLPV AEPNKWKMDH GRGGCGEDLN KELALPEVEW KDQDLGLNHY MHHSEHGQSR 240 QIFDDSAMPV PVCSCTGALQ QCYKWGTGGW QSACCTTTMS IYPLPMMPNK RHARVSGRKM 300 SGSAFTKLLS RLAIEGYDLS VPVDLKDHWA RHGTNRYITI K*

Sequence ? help Back to Top

Protein Sequence Length: 342 aa Download sequence Send to blast

MVDTNRISTE WLIPSHLMKD QHALSIKFMN IISERDGALQ ERNLALSERK AALAERDMAI  60
LQRDTALVER NNALIERDNA IAAFEYRENA TMSVTSSPTC PERYGTISET RYMHHSEHGQ  120
HPPHLAEVPC HARELHFADA LPIQAAASEA VKPQRNKRTK SNKPPLFKRA SKPSKKGKTV  180
GEDLNKHLPV AEPNKWKMDH GRGGCGEDLN KELALPEVEW KDQDLGLNHY MHHSEHGQSR  240
QIFDDSAMPV PVCSCTGALQ QCYKWGTGGW QSACCTTTMS IYPLPMMPNK RHARVSGRKM  300
SGSAFTKLLS RLAIEGYDLS VPVDLKDHWA RHGTNRYITI K*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010263912.1	1e-130	PREDICTED: protein BASIC PENTACYSTEINE6
Refseq	XP_010263913.1	1e-130	PREDICTED: protein BASIC PENTACYSTEINE6
Refseq	XP_010263915.1	1e-130	PREDICTED: protein BASIC PENTACYSTEINE6
Refseq	XP_010263916.1	1e-130	PREDICTED: protein BASIC PENTACYSTEINE6
Refseq	XP_010263917.1	1e-130	PREDICTED: protein BASIC PENTACYSTEINE6
Refseq	XP_010263918.1	1e-130	PREDICTED: protein BASIC PENTACYSTEINE6
Refseq	XP_010263919.1	1e-130	PREDICTED: protein BASIC PENTACYSTEINE6
Refseq	XP_010263920.1	1e-130	PREDICTED: protein BASIC PENTACYSTEINE6
Refseq	XP_010263921.1	1e-130	PREDICTED: protein BASIC PENTACYSTEINE6
Refseq	XP_010263922.1	1e-130	PREDICTED: protein BASIC PENTACYSTEINE6
Refseq	XP_010263924.1	1e-130	PREDICTED: protein BASIC PENTACYSTEINE6
Swissprot	Q5VSA8	1e-103	BBRD_ORYSJ; Barley B recombinant-like protein D
TrEMBL	A0A2G5EK89	0.0	A0A2G5EK89_AQUCA; Uncharacterized protein
STRING	Aquca_007_00374.1	0.0	(Aquilegia coerulea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G42520.1	2e-98	basic pentacysteine 6

Link Out ? help Back to Top
Phytozome	Aqcoe5G176600.6.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]