PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aqcoe5G176600.5.p

Organism

Aquilegia coerulea

Taxonomic ID

218851

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia

Family

BBR-BPC

Protein Properties

Length: 351aa MW: 39426.8 Da PI: 9.0355

Description

BBR-BPC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aqcoe5G176600.5.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GAGA_bind	347.8	2.5e-106	8	350	8	301
GAGA_bind 8 e..rnkg.yye....paaslke..nlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllvens 90 e r+k +y+ p++ +k+ l+++ m +i+erd +++ernlalse+kaa+aerdma lqrd+al ern+al+erdn+++a +++en+ Aqcoe5G176600.5.p 8 EngRHKQdQYRgwliPSHLMKDqhALSIKFMNIISERDGALQERNLALSERKAALAERDMAILQRDTALVERNNALIERDNAIAAFEYRENA 99 44566666666666655455541158999***********************************************************99 PP GAGA_bind 91 la.....salpvgvqvlsgtksidslqq.lsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskk 176 ++ ++p ++++s+t+ ++++++ ++ p+l++ + ++re + +alpi+ aa+ea + +++k+++++k p+ k+a+k+ kk+++ + Aqcoe5G176600.5.p 100 TMsvtssPTCPERYGTISETRYMHHSEHgQHPPHLAEVPCHARELHFADALPIQAAASEAVKPQRNKRTKSNKPPLFKRASKPSKKGKTVGE 191 8778877789************995555*********************************************99998887766 PP GAGA_bind 177 kvkkesader.......................skaekksidlvlngvs...........lDestlPvPvCsCtGalrqCYkWGnGGWqSaC 234 + +k+ + e+k++dl+ln+ +D+s++PvPvCsCtGal+qCYkWG+GGWqSaC Aqcoe5G176600.5.p 192 DLNKHLPVAEpnkwkmdhgrggcgedlnkelalPEVEWKDQDLGLNHYMhhsehgqsrqiFDDSAMPVPVCSCTGALQQCYKWGTGGWQSAC 283 655543222234799************99899*****9753223333334449*************************** PP GAGA_bind 235 CtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301 Cttt+S+yPLP+++++r+aR++grKmS++af+klL++La eGydls pvDLkdhWA+HGtn+++ti+ Aqcoe5G176600.5.p 284 CTTTMSIYPLPMMPNKRHARVSGRKMSGSAFTKLLSRLAIEGYDLSVPVDLKDHWARHGTNRYITIK 350 ****************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01226	4.1E-131	1	350	IPR010409	GAGA-binding transcriptional activator
Pfam	PF06217	1.3E-87	14	350	IPR010409	GAGA-binding transcriptional activator

Sequence ? help Back to Top
Protein Sequence Length: 351 aa Download sequence Send to blast
MEGGGPRENG RHKQDQYRGW LIPSHLMKDQ HALSIKFMNI ISERDGALQE RNLALSERKA 60 ALAERDMAIL QRDTALVERN NALIERDNAI AAFEYRENAT MSVTSSPTCP ERYGTISETR 120 YMHHSEHGQH PPHLAEVPCH ARELHFADAL PIQAAASEAV KPQRNKRTKS NKPPLFKRAS 180 KPSKKGKTVG EDLNKHLPVA EPNKWKMDHG RGGCGEDLNK ELALPEVEWK DQDLGLNHYM 240 HHSEHGQSRQ IFDDSAMPVP VCSCTGALQQ CYKWGTGGWQ SACCTTTMSI YPLPMMPNKR 300 HARVSGRKMS GSAFTKLLSR LAIEGYDLSV PVDLKDHWAR HGTNRYITIK *

Sequence ? help Back to Top

Protein Sequence Length: 351 aa Download sequence Send to blast

MEGGGPRENG RHKQDQYRGW LIPSHLMKDQ HALSIKFMNI ISERDGALQE RNLALSERKA  60
ALAERDMAIL QRDTALVERN NALIERDNAI AAFEYRENAT MSVTSSPTCP ERYGTISETR  120
YMHHSEHGQH PPHLAEVPCH ARELHFADAL PIQAAASEAV KPQRNKRTKS NKPPLFKRAS  180
KPSKKGKTVG EDLNKHLPVA EPNKWKMDHG RGGCGEDLNK ELALPEVEWK DQDLGLNHYM  240
HHSEHGQSRQ IFDDSAMPVP VCSCTGALQQ CYKWGTGGWQ SACCTTTMSI YPLPMMPNKR  300
HARVSGRKMS GSAFTKLLSR LAIEGYDLSV PVDLKDHWAR HGTNRYITIK *

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010263912.1	1e-135	PREDICTED: protein BASIC PENTACYSTEINE6
Refseq	XP_010263913.1	1e-135	PREDICTED: protein BASIC PENTACYSTEINE6
Refseq	XP_010263915.1	1e-135	PREDICTED: protein BASIC PENTACYSTEINE6
Refseq	XP_010263916.1	1e-135	PREDICTED: protein BASIC PENTACYSTEINE6
Refseq	XP_010263917.1	1e-135	PREDICTED: protein BASIC PENTACYSTEINE6
Refseq	XP_010263918.1	1e-135	PREDICTED: protein BASIC PENTACYSTEINE6
Refseq	XP_010263919.1	1e-135	PREDICTED: protein BASIC PENTACYSTEINE6
Refseq	XP_010263920.1	1e-135	PREDICTED: protein BASIC PENTACYSTEINE6
Refseq	XP_010263921.1	1e-135	PREDICTED: protein BASIC PENTACYSTEINE6
Refseq	XP_010263922.1	1e-135	PREDICTED: protein BASIC PENTACYSTEINE6
Refseq	XP_010263924.1	1e-135	PREDICTED: protein BASIC PENTACYSTEINE6
Swissprot	Q5VSA8	1e-108	BBRD_ORYSJ; Barley B recombinant-like protein D
TrEMBL	A0A2G5EK89	0.0	A0A2G5EK89_AQUCA; Uncharacterized protein
STRING	Aquca_007_00374.1	0.0	(Aquilegia coerulea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G42520.1	1e-104	basic pentacysteine 6

Link Out ? help Back to Top
Phytozome	Aqcoe5G176600.5.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]