PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aqcoe5G171100.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
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Family | B3 | ||||||||
Protein Properties | Length: 499aa MW: 56852.6 Da PI: 10.2568 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 54.8 | 1.7e-17 | 27 | 115 | 3 | 98 |
EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 k+ ++s+ + ++l+lp kf++++g++ s +l+ ++g++W v+l rk+++++++ +GW+eFv+ + +g f+vFk++g+s+f +v Aqcoe5G171100.1.p 27 KI-IHSNIIQDQCLILPLKFIQKFGND--VSNAAILKVSDGKRWHVEL--RKTDSQIMFHNGWQEFVDYYSISTGHFLVFKYIGNSTF--RV 111 44.4788888899***********877..4558999************..**********************************9999..77 PP EEE- CS B3 95 kvfr 98 +f+ Aqcoe5G171100.1.p 112 FIFD 115 7776 PP | |||||||
2 | B3 | 51.9 | 1.3e-16 | 205 | 284 | 13 | 97 |
TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS B3 13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 +g l++p +f++++ + + + ltle ++g +W v +i ++ ++ l+kGWk Fvk+n Lk+gD++vF+++++ + +v++ Aqcoe5G171100.1.p 205 LGYLRIPTHFTKRYLTD--SLRNLTLEVSEGHRWLVGCILYRG-HGIRLSKGWKMFVKENSLKVGDVCVFEMIKH--ALWKVHIS 284 56799*********655..4457***************65433.3578***********************8763..32456655 PP | |||||||
3 | B3 | 49.6 | 7.2e-16 | 356 | 444 | 13 | 99 |
TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE.........EEETTE....EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.......rkksgr....yvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 ++ l++p +f ++h + + ltle ++g +W+v + + + l+kGW++Fv++n+L+egD++vF++++ ++ + Aqcoe5G171100.1.p 356 LHYLRIPVRFSARHLDN-LR--SLTLEVSEGHRWSVSGFVynstikgK----YistnVHLSKGWQKFVRENNLREGDVCVFEMIK--GTLWK 438 4679*******999444.33..6*************995556554333....133458888*********************876..34356 PP EEEE-S CS B3 94 vkvfrk 99 v++ rk Aqcoe5G171100.1.p 439 VHISRK 444 777766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd10017 | 2.23E-16 | 23 | 115 | No hit | No description |
PROSITE profile | PS50863 | 13.987 | 24 | 117 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 8.3E-22 | 24 | 118 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.61E-21 | 24 | 124 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 3.1E-15 | 25 | 115 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.0E-14 | 25 | 117 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 5.89E-21 | 191 | 286 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.7E-21 | 193 | 286 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 13.324 | 193 | 287 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 2.04E-16 | 194 | 275 | No hit | No description |
SMART | SM01019 | 4.6E-11 | 196 | 287 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 7.6E-15 | 205 | 285 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 2.35E-19 | 341 | 445 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 4.1E-20 | 342 | 445 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 12.196 | 344 | 445 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 3.42E-16 | 345 | 443 | No hit | No description |
SMART | SM01019 | 1.8E-6 | 347 | 445 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.1E-13 | 355 | 444 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 499 aa Download sequence Send to blast |
MCLKHHPQTT QVKQKKKKMK KGFEFCKIIH SNIIQDQCLI LPLKFIQKFG NDVSNAAILK 60 VSDGKRWHVE LRKTDSQIMF HNGWQEFVDY YSISTGHFLV FKYIGNSTFR VFIFDTTCSE 120 IGYPNNVDNL KEPNCGEEIE DKRLCNSHCD ANGINSSKKQ EEFAVIPSVK GHSPTKTPVT 180 RKSALVGKQK DGVRSFRVVI KASYLGYLRI PTHFTKRYLT DSLRNLTLEV SEGHRWLVGC 240 ILYRGHGIRL SKGWKMFVKE NSLKVGDVCV FEMIKHALWK VHISRKGTSS PTFFEEEDEH 300 HSTAKQRKGV VVPIPERHLC AKAFVTSKEK TGTTEASRVL KLKHPSFRAV IKSSYLHYLR 360 IPVRFSARHL DNLRSLTLEV SEGHRWSVSG FVYNSTIKGK YISTNVHLSK GWQKFVRENN 420 LREGDVCVFE MIKGTLWKVH ISRKSKNVLP TLVKEEEDGH HSPAEQGKGG VVPILERHCC 480 GKASLTSKEK TRAVEAST* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A2G5EKB6 | 0.0 | A0A2G5EKB6_AQUCA; Uncharacterized protein | ||||
STRING | Aquca_007_00471.1 | 0.0 | (Aquilegia coerulea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18990.1 | 2e-39 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Aqcoe5G171100.1.p |