PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aqcoe5G145900.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
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Family | AP2 | ||||||||
Protein Properties | Length: 505aa MW: 56638.9 Da PI: 6.4721 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 53.4 | 6.4e-17 | 169 | 218 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g Aqcoe5G145900.2.p 169 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 218 78*******************......55************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 1.31E-15 | 169 | 227 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 5.9E-9 | 169 | 218 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.4E-31 | 170 | 232 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 17.701 | 170 | 226 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 6.3E-17 | 170 | 226 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.49E-11 | 170 | 225 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010073 | Biological Process | meristem maintenance | ||||
GO:0010093 | Biological Process | specification of floral organ identity | ||||
GO:0048316 | Biological Process | seed development | ||||
GO:0048481 | Biological Process | plant ovule development | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 505 aa Download sequence Send to blast |
MWDLNDSPDE LHHHHEEPSS GEREDEKGKR VGLNSNENSS SSAHVFNIED GSDNEEEEEE 60 KEEVGRKRSH KIFGFSFTHD NDDDEDEEND NYCSSEPVVT RQLFPVNDDQ SEMGSTTTAE 120 NSGMGMGKTA PFPRAQWVGV KFCHSDPVIG SSQSQPIKKS RRGPRSRSSQ YRGVTFYRRT 180 GRWESHIWDC GKQVYLGGFD TAHAAARAYD RAAIKFRGVE ADINFSLDDY EDDLKQMTNL 240 TKEEFVHVLR RQSTGFPRGS SKFRGVTLHK CGRWEARMGQ FLDMCILVSS ILKQKLQGNN 300 AVHNLDLSLG NSTSTSDSHE SRDDNRLHAM DPRYSQMPYV SDWSNNQRCS MRKFDANANH 360 MGANHSYLYK QNAYSESEAI RLLNQTHIQS PPNRLNASEP FIYGQPRRSG EVSMFHIAQP 420 QFSPPNYQLP NSDNGGLTGL GGGGGPSLPT GEQLRQSGWN RSSNSWLAGT PYATPAASSG 480 FPLQIIRPTT AWPTNSFHSH MRST* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional activator that promotes early floral meristem identity (PubMed:7919989). Is required subsequently for the transition of an inflorescence meristem into a floral meristem (PubMed:1675158). Plays a central role in the specification of floral identity, particularly for the normal development of sepals and petals in the wild-type flower, by spatially controlling the expression domains of multiple floral organ identity genes (PubMed:1675158, PubMed:23034631). Acts as A class cadastral protein by repressing the C class floral homeotic gene AGAMOUS in association with other repressors like LEUNIG and SEUSS (PubMed:1675158). Directly represses AGAMOUS by recruiting the transcriptional corepressor TOPLESS and the histone deacetylase HDA19 (PubMed:23034631). It is also required during seed development (PubMed:1675158). {ECO:0000269|PubMed:1675158, ECO:0000269|PubMed:23034631, ECO:0000269|PubMed:7919989}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Negatively regulated by the C class floral homeotic protein AGAMOUS in stamens and carpels. MicroRNA 172 (miRNA172) negatively regulates APETALA2 at the translational level and may modulate its expression pattern. Seems not to be influenced by jasmonate and Alternaria brassicicola. {ECO:0000269|PubMed:12805630, ECO:0000269|PubMed:12893888, ECO:0000269|PubMed:14555699}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001267881.1 | 1e-143 | transcription factor APETALA2 | ||||
Swissprot | P47927 | 1e-82 | AP2_ARATH; Floral homeotic protein APETALA 2 | ||||
TrEMBL | A0A2G5ELB6 | 0.0 | A0A2G5ELB6_AQUCA; Uncharacterized protein | ||||
STRING | Aquca_007_00714.1 | 0.0 | (Aquilegia coerulea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36920.2 | 4e-83 | AP2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Aqcoe5G145900.2.p |