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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Aqcoe5G120800.1.p | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
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| Family | Nin-like | ||||||||
| Protein Properties | Length: 338aa MW: 38723.2 Da PI: 5.8406 | ||||||||
| Description | Nin-like family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | RWP-RK | 59.1 | 8.1e-19 | 196 | 245 | 3 | 52 |
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52
k++s++d+skyF+lpi++A+ +L++++ +L ++C +GI WP+Rkiksl
Aqcoe5G120800.1.p 196 KDLSFDDISKYFDLPITEACACLNIGQKLLTKKCKDFGILNWPYRKIKSL 245
79**********************************************97 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PROSITE profile | PS51519 | 14.22 | 177 | 265 | IPR003035 | RWP-RK domain |
| Pfam | PF02042 | 2.1E-14 | 198 | 245 | IPR003035 | RWP-RK domain |
| Sequence ? help Back to Top |
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| Protein Sequence Length: 338 aa Download sequence Send to blast |
MNDEIFIIYV HTYDIYSLRM SISGGEQMES HIVTGRMYQG ESSSNQSKGK SPVLALYQNW 60 SSDLSYDLDE PKPEVDAPAL IAMEFSICEI KSKSLDLNWP PLEGDTYEVI ENQPITSAMM 120 EDQLKSSLTE NWQTPAGTGI GPTMQAQASL LVDVNIYDYN PLTENQQTLA GIDIQSTGPK 180 FAPGKRHPEW YKNYVKDLSF DDISKYFDLP ITEACACLNI GQKLLTKKCK DFGILNWPYR 240 KIKSLDNLIR NIKEDVERQE PLDKTFMDEA LKMLQIIEHE KEFLKKRPVF QIKGETKKLR 300 QYFFGRNYDI KRAKKAKLIK EQSDPEMKRK GKQSLSA* |
| Nucleic Localization Signal ? help Back to Top | |||
|---|---|---|---|
| No. | Start | End | Sequence |
| 1 | 324 | 332 | PEMKRKGKQ |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT4G35590.1 | 2e-25 | RWP-RK domain-containing protein | ||||
| Link Out ? help Back to Top | |
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| Phytozome | Aqcoe5G120800.1.p |
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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