PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aqcoe5G111900.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
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Family | SBP | ||||||||
Protein Properties | Length: 1075aa MW: 119026 Da PI: 8.0501 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 127.7 | 4.3e-40 | 154 | 230 | 2 | 78 |
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 Cqv++C+ dl++ak+yhrrhkvCe hsk++++lv +++qrfCqqCsrfh lsefDe+krsCrrrLa+hn+rrrk+q+ Aqcoe5G111900.2.p 154 CQVDDCKGDLTNAKDYHRRHKVCELHSKTTKALVGKQMQRFCQQCSRFHPLSEFDEGKRSCRRRLAGHNRRRRKTQP 230 **************************************************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 8.5E-33 | 149 | 215 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 31.744 | 151 | 228 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 8.37E-37 | 152 | 232 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 3.3E-29 | 154 | 227 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005886 | Cellular Component | plasma membrane | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1075 aa Download sequence Send to blast |
MEEMGAQVAH PIYVHQQQRP GRYYEGPPAA KKRDLPWLNP NYHHHQQQQQ QQQLFQQSTG 60 NWDPKAWGWD STRMVAKASE VETPVGMVKM VGTGQRKKGE KESKPMVVEK TLDDESENLT 120 LKLGGSLFPG EEATTRPNKR VRSGSPGNVS YPKCQVDDCK GDLTNAKDYH RRHKVCELHS 180 KTTKALVGKQ MQRFCQQCSR FHPLSEFDEG KRSCRRRLAG HNRRRRKTQP EDVSSRVPGN 240 LENNNDGNLD LVNLLTVLAR LQGNNAGKIT NTTSIPDKER LVQILHKLNT LPVATNSSSS 300 LPVNGGFDLN VSQDPSEHPN KVNGNASTMD LLAVLSAAVS ASSPDALANL SRSSHSSNDD 360 KNKMNCSDQP AGYNFLTKPV SGFHSAGAER SCTTFHSPIE VSDCRVQEAQ PSLPLQLFNS 420 SPENDFPSKL DSSRKYLSSD SSNPMEERSP SSSPPVVHTL FPLRNASESM KHESLSTSGE 480 DNGTAAASAT RGWNSPMEFF KDSTARAQNS SVHNVPYQVG YASSSGSDHS PSSSNSDSQD 540 RTGRILFKLF DKDPSSFPGT LRTEILNWLS QSPSEIESYI RPGCVVLSIY ISMPSTAWNQ 600 LQGELFQRVN SLVQDSSSDF WRSGRFLVHT DKQLASHKDG KIHLCKSWKT WSSPELISVM 660 PLAVVGGQKT SLVLRGRNLT VPGTKIHCTY MGGYLSKEVE GSEGTVYDDA SSETFSFPGG 720 ASCALGRCFI EVENGFKGNS FPLIIADASI CQELRLLEFE FEEEARMSDV NSEDTSQDLA 780 RPRSREDVVY FLNELGWLFQ RKNTVTLSDL ADFSLARFKF LFAFSVERDW CALVRKLLDI 840 LVERNLVKDG LSRDSFEMLS EVHLLNRAVK RKCRGMINLL VHYSICSGSE GSKKYIFPPN 900 QAGPGGVTPL HLAACTHDSE ALIDALTNDP QQIGLNCWSS LPDGSGQSPY DYAISRRNYS 960 YNKLVDQKAA DRKLGQVSIQ VGNQTLDQSW DIEQVARQMS QSGQGKQSCT RCSTMMTKHY 1020 NRMPVSHGVL HRPYIRSMLA IAAVCVCVAL FLRGSPDIGA VAPFKWENLK YGTG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 6e-30 | 144 | 227 | 1 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}. | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00155 | DAP | Transfer from AT1G20980 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010256977.1 | 0.0 | PREDICTED: squamosa promoter-binding-like protein 14 | ||||
Swissprot | A2YX04 | 0.0 | SPL15_ORYSI; Squamosa promoter-binding-like protein 15 | ||||
Swissprot | Q6Z8M8 | 0.0 | SPL15_ORYSJ; Squamosa promoter-binding-like protein 15 | ||||
TrEMBL | A0A2G5EMM4 | 0.0 | A0A2G5EMM4_AQUCA; Uncharacterized protein | ||||
STRING | Aquca_007_00971.1 | 0.0 | (Aquilegia coerulea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G20980.1 | 0.0 | squamosa promoter binding protein-like 14 |
Link Out ? help Back to Top | |
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Phytozome | Aqcoe5G111900.2.p |