PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe5G111900.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family SBP
Protein Properties Length: 1075aa    MW: 119026 Da    PI: 8.0501
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe5G111900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP127.74.3e-40154230278
                        -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                        Cqv++C+ dl++ak+yhrrhkvCe hsk++++lv +++qrfCqqCsrfh lsefDe+krsCrrrLa+hn+rrrk+q+
  Aqcoe5G111900.1.p 154 CQVDDCKGDLTNAKDYHRRHKVCELHSKTTKALVGKQMQRFCQQCSRFHPLSEFDEGKRSCRRRLAGHNRRRRKTQP 230
                        **************************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.108.5E-33149215IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.744151228IPR004333Transcription factor, SBP-box
SuperFamilySSF1036128.37E-37152232IPR004333Transcription factor, SBP-box
PfamPF031103.3E-29154227IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042742Biological Processdefense response to bacterium
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1075 aa     Download sequence    Send to blast
MEEMGAQVAH PIYVHQQQRP GRYYEGPPAA KKRDLPWLNP NYHHHQQQQQ QQQLFQQSTG  60
NWDPKAWGWD STRMVAKASE VETPVGMVKM VGTGQRKKGE KESKPMVVEK TLDDESENLT  120
LKLGGSLFPG EEATTRPNKR VRSGSPGNVS YPKCQVDDCK GDLTNAKDYH RRHKVCELHS  180
KTTKALVGKQ MQRFCQQCSR FHPLSEFDEG KRSCRRRLAG HNRRRRKTQP EDVSSRVPGN  240
LENNNDGNLD LVNLLTVLAR LQGNNAGKIT NTTSIPDKER LVQILHKLNT LPVATNSSSS  300
LPVNGGFDLN VSQDPSEHPN KVNGNASTMD LLAVLSAAVS ASSPDALANL SRSSHSSNDD  360
KNKMNCSDQP AGYNFLTKPV SGFHSAGAER SCTTFHSPIE VSDCRVQEAQ PSLPLQLFNS  420
SPENDFPSKL DSSRKYLSSD SSNPMEERSP SSSPPVVHTL FPLRNASESM KHESLSTSGE  480
DNGTAAASAT RGWNSPMEFF KDSTARAQNS SVHNVPYQVG YASSSGSDHS PSSSNSDSQD  540
RTGRILFKLF DKDPSSFPGT LRTEILNWLS QSPSEIESYI RPGCVVLSIY ISMPSTAWNQ  600
LQGELFQRVN SLVQDSSSDF WRSGRFLVHT DKQLASHKDG KIHLCKSWKT WSSPELISVM  660
PLAVVGGQKT SLVLRGRNLT VPGTKIHCTY MGGYLSKEVE GSEGTVYDDA SSETFSFPGG  720
ASCALGRCFI EVENGFKGNS FPLIIADASI CQELRLLEFE FEEEARMSDV NSEDTSQDLA  780
RPRSREDVVY FLNELGWLFQ RKNTVTLSDL ADFSLARFKF LFAFSVERDW CALVRKLLDI  840
LVERNLVKDG LSRDSFEMLS EVHLLNRAVK RKCRGMINLL VHYSICSGSE GSKKYIFPPN  900
QAGPGGVTPL HLAACTHDSE ALIDALTNDP QQIGLNCWSS LPDGSGQSPY DYAISRRNYS  960
YNKLVDQKAA DRKLGQVSIQ VGNQTLDQSW DIEQVARQMS QSGQGKQSCT RCSTMMTKHY  1020
NRMPVSHGVL HRPYIRSMLA IAAVCVCVAL FLRGSPDIGA VAPFKWENLK YGTG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A6e-30144227184squamosa promoter binding protein-like 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00155DAPTransfer from AT1G20980Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010256977.10.0PREDICTED: squamosa promoter-binding-like protein 14
SwissprotA2YX040.0SPL15_ORYSI; Squamosa promoter-binding-like protein 15
SwissprotQ6Z8M80.0SPL15_ORYSJ; Squamosa promoter-binding-like protein 15
TrEMBLA0A2G5EMM40.0A0A2G5EMM4_AQUCA; Uncharacterized protein
STRINGAquca_007_00971.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G20980.10.0squamosa promoter binding protein-like 14