PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aqcoe5G104200.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
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Family | LBD | ||||||||
Protein Properties | Length: 179aa MW: 19736.6 Da PI: 6.8433 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 90.9 | 1.5e-28 | 2 | 103 | 1 | 97 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqql 87 +C++C+vlr++C+++Cvl+ ++ ++q++++a+++k FG+sn++++++a++e +r+++++sl+yeA+ r+ +Pv G++g+i++++++ Aqcoe5G104200.1.p 2 SCSGCRVLRKRCSESCVLRHCLqwienHESQAHATAFLAKYFGRSNLISFISAVHEIHRPALFRSLLYEACGRTLNPVDGVIGLIWTGNWRA 93 6*********************9998777889************************************************************ PP DUF260 88 eqlkaelall 97 +++++e++l Aqcoe5G104200.1.p 94 CHMAVETVLS 103 **99998765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 18.23 | 1 | 107 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.0E-24 | 2 | 100 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 179 aa Download sequence Send to blast |
MSCSGCRVLR KRCSESCVLR HCLQWIENHE SQAHATAFLA KYFGRSNLIS FISAVHEIHR 60 PALFRSLLYE ACGRTLNPVD GVIGLIWTGN WRACHMAVET VLSGDIIQPM SIPAMNFCNN 120 LEAESNINLR PCLSSEISAK EETTKTSLID SGNSATMSFE SSEVGHYVGE PKLLNLFV* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010272301.1 | 3e-57 | PREDICTED: LOB domain-containing protein 37-like | ||||
Swissprot | Q9SZE8 | 9e-53 | LBD39_ARATH; LOB domain-containing protein 39 | ||||
TrEMBL | A0A2G5DKX2 | 1e-129 | A0A2G5DKX2_AQUCA; Uncharacterized protein | ||||
STRING | Aquca_017_00034.1 | 1e-130 | (Aquilegia coerulea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37540.1 | 4e-55 | LOB domain-containing protein 39 |
Link Out ? help Back to Top | |
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Phytozome | Aqcoe5G104200.1.p |