PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe5G074300.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family ARF
Protein Properties Length: 686aa    MW: 75662.1 Da    PI: 7.6814
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe5G074300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3651.1e-20177278199
                        EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                        f+k+ t sd++++g +++ +++ae++     + +++  ++l+ +d++g +W++++ +r+ ++r++lt+GW+ Fv+a++++ gD ++F     
  Aqcoe5G074300.1.p 177 FCKAVTASDTSTHGGFSVHRRHAEQCfprldMTQETPAQELVTKDLHGVEWRFRHVFRGAPKRHLLTSGWSTFVSAKKIEPGDNFIFL--CG 266
                        89****************************9555555669************************************************..44 PP

                        SEE..EEEEE-S CS
                 B3  88 sefelvvkvfrk 99 
                        +++ ++++v+r+
  Aqcoe5G074300.1.p 267 ENGDYRIGVRRS 278
                        788889999986 PP
2Auxin_resp94.61.5e-31302384183
         Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                        a ha+ t+++F+v+Y+Pr+s+seF+ ++++++++ k+++svG+ f+++f  +d ++ +l+Gt+ g++ +dpvrWp+SkWr+Lk
  Aqcoe5G074300.1.p 302 AYHAVCTGTMFSVYYRPRTSPSEFILPYHEFMNSAKSNLSVGTAFRLKFSDNDIPRESLMGTIDGIEVVDPVRWPGSKWRCLK 384
                        67999****************************************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.9E-34171287IPR015300DNA-binding pseudobarrel domain
CDDcd100172.41E-18175277No hitNo description
SuperFamilySSF1019361.05E-30175304IPR015300DNA-binding pseudobarrel domain
SMARTSM010199.4E-15177279IPR003340B3 DNA binding domain
PROSITE profilePS5086312.111177279IPR003340B3 DNA binding domain
PfamPF023624.7E-18177278IPR003340B3 DNA binding domain
PfamPF065071.0E-27302384IPR010525Auxin response factor
PfamPF023095.2E-7580662IPR033389AUX/IAA domain
PROSITE profilePS5174520.981583665IPR000270PB1 domain
SuperFamilySSF542772.21E-7584660No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 686 aa     Download sequence    Send to blast
MASVGSTSLD GLCPYSADLA TIKEALRCAT LGNLLLPYRF SLSVSHTHSQ RWYIVSGAKI  60
SLQLYANKDA VYNELWHACA GPNVNIPVVG DKVLYFPQGH LEQVQMYADQ DHDRGVPLYV  120
LPYMISCIVI HVQLKVEIET DEVFAQVTLL PETKQRNNTL PKGILPSVPQ RIKVPHFCKA  180
VTASDTSTHG GFSVHRRHAE QCFPRLDMTQ ETPAQELVTK DLHGVEWRFR HVFRGAPKRH  240
LLTSGWSTFV SAKKIEPGDN FIFLCGENGD YRIGVRRSKK SAGSVMSVLT SHSMQIGVVA  300
TAYHAVCTGT MFSVYYRPRT SPSEFILPYH EFMNSAKSNL SVGTAFRLKF SDNDIPRESL  360
MGTIDGIEVV DPVRWPGSKW RCLKVNWNGP CTIARPDRIS PWEIDPIEIS NKSSVPVSIL  420
PKRSHTSISS VFVNQGAGPS KNLIEPAALP VLQGQETSGP SSGVQEEPSF SQWISSSSDS  480
GQVQRRKLDN QPPPITVHAS TSVPHVSMNN STSQGSRDPK PNEAEDASTS LTRPLNNTSC  540
MLFGVDLLSQ SGNLESNPLS QSIDPSISSG LVKQYQNCSS ISRSCIKVHK YGTALGRVVD  600
LTSLNSYDEL MHQLDQMFDF KGNLKDQNSD WCVIYMDAEG DIMKIGDSAW VEFRCMVQKL  660
LICPKDQMQT LLLLIGTAPA NASSK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-1256941317361Auxin response factor 1
4ldw_A1e-1256941317361Auxin response factor 1
4ldw_B1e-1256941317361Auxin response factor 1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010240998.10.0PREDICTED: auxin response factor 23-like
RefseqXP_010241005.10.0PREDICTED: auxin response factor 23-like
RefseqXP_019052029.10.0PREDICTED: auxin response factor 23-like
TrEMBLA0A2G5DM620.0A0A2G5DM62_AQUCA; Auxin response factor
STRINGAquca_017_00295.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59750.41e-151auxin response factor 1