PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe5G047600.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family HSF
Protein Properties Length: 386aa    MW: 43636 Da    PI: 4.5756
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe5G047600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind115.24e-36681592102
                        HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXX CS
       HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkel 93 
                        Fl+k++++++d+++++++sws+ gnsfvv+d+++f+ ++Lp+yFkhsnf+SFvRQLn+YgF+kv+ ++         weF+++ F +g+k+l
  Aqcoe5G047600.1.p  68 FLNKTFDMVDDPSTDSIVSWSRGGNSFVVWDPHTFSMSLLPRYFKHSNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGQKHL 150
                        9****************************************************************999.........*************** PP

                        XXXXXXXXX CS
       HSF_DNA-bind  94 lekikrkks 102
                        l++i+r+k 
  Aqcoe5G047600.1.p 151 LKNIRRRKA 159
                        ******986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.0E-3964157IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467854.9E-3664157IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004153.4E-6264157IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.4E-3268157IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.6E-206891IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.6E-20106118IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS004340107131IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.6E-20119131IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MNPLGQIKEE FPIQSSSSTI PLSQSMDCYN VMGPIIPSQS MGGLHEAGPS VLPPQPMEGL  60
HDVGPPPFLN KTFDMVDDPS TDSIVSWSRG GNSFVVWDPH TFSMSLLPRY FKHSNFSSFV  120
RQLNTYGFRK VDPDRWEFAN EGFLRGQKHL LKNIRRRKAP SHPSLQQNAL GACVEFGRFG  180
LEGDIDQLRR DKQVLMTELV KMRQQQQNTR SQLQAMELRL QGTEQKQQQM MTFLARAMQN  240
PTFLQQLVQQ KDKKKELEEA ITKKRRRPID MGQADESSGS ILGEDSNRLG LQSFADTCNF  300
EGSSELDTLA LEMQGYSRAV KEEVFEELEL ELELESGDKT LDEIFWEELM CEKLGDEDAP  360
TIDNDEDGDQ NVVFNRLGDL GSSLS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A7e-266615718120Heat shock factor protein 1
5d5u_B9e-266615727129Heat shock factor protein 1
5d5v_B9e-266615727129Heat shock factor protein 1
5d5v_D9e-266615727129Heat shock factor protein 1
5hdg_A7e-26661578110Heat shock factor protein 1
5hdn_A7e-26661578110Heat shock factor protein 1
5hdn_B7e-26661578110Heat shock factor protein 1
5hdn_C7e-26661578110Heat shock factor protein 1
5hdn_D7e-26661578110Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1252266KKKELEEAITKKRRR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator expressed upon environmental stress that specifically binds DNA of heat shock promoter elements (HSE). Involved in heat stress response. {ECO:0000269|PubMed:18064488}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00371DAPTransfer from AT3G22830Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat stress. {ECO:0000269|PubMed:18064488}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP0139862e-35KP013986.1 Populus simonii heat shock transcription factor A6b2 (HsfA6b2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020425668.11e-158heat stress transcription factor A-7a
SwissprotQ6F3881e-119HFA2E_ORYSJ; Heat stress transcription factor A-2e
TrEMBLA0A2G5DNI40.0A0A2G5DNI4_AQUCA; Uncharacterized protein
STRINGAquca_017_00542.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.17e-99heat shock transcription factor A6B
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]