PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aqcoe5G028600.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
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Family | C2H2 | ||||||||
Protein Properties | Length: 179aa MW: 20073.5 Da PI: 9.2008 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.7 | 9.1e-05 | 33 | 55 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+++F++ L Hi+ H Aqcoe5G028600.1.p 33 HPCHFCKMVFKTAKALGDHIKDH 55 78******************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE pattern | PS00028 | 0 | 35 | 55 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 179 aa Download sequence Send to blast |
MFYNQARQSL SSINNNPNEQ PMAQPFSSDV HTHPCHFCKM VFKTAKALGD HIKDHERNLL 60 VTPTISSVQQ ALQREELRKT AQRPTSSSSL AHTPTFGAST SVISPKSVPT PISFLASSSS 120 NMQPKTDAKR INYHTRPFLD NAEKHLKIES DDLSEERRKR SEKGQEDESE KVDLTLRL* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A2G5DPH2 | 1e-128 | A0A2G5DPH2_AQUCA; Uncharacterized protein | ||||
STRING | Aquca_017_00707.1 | 1e-129 | (Aquilegia coerulea) |
Link Out ? help Back to Top | |
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Phytozome | Aqcoe5G028600.1.p |