PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aqcoe5G028500.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
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Family | bHLH | ||||||||
Protein Properties | Length: 219aa MW: 24435.6 Da PI: 5.9083 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 33.8 | 6.1e-11 | 68 | 114 | 5 | 54 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 + rE+ RRd++N++f+ L ++l + + K +K +iL A++ +++L Aqcoe5G028500.1.p 68 KACREKMRRDKLNDRFADLSSILEPG---RPAKTDKTAILGDAIRVLNQL 114 678**********************8...89****************999 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 12.512 | 63 | 114 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 8.72E-8 | 67 | 119 | No hit | No description |
Pfam | PF00010 | 1.9E-8 | 68 | 114 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.83E-12 | 68 | 130 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 9.3E-10 | 69 | 120 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.6E-12 | 70 | 137 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 219 aa Download sequence Send to blast |
MDSFQEDSSW NLIDYSRIIE DTSSNDFYWS NQSACMELEV SPADAVLTDK GCTRKRGRNE 60 SCSGPGSKAC REKMRRDKLN DRFADLSSIL EPGRPAKTDK TAILGDAIRV LNQLRAESQE 120 LKVANEKLQE DIKNLKTEKN ELREEKGLLK ADKERIEQQM KAMAIVPGGI VPPHPAAYQA 180 GVNKFMAFPS YGGYPMWQYI PPAALDTSQD HVLRPPVA* |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00102 | PBM | Transfer from AT4G14410 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010262298.1 | 1e-127 | PREDICTED: transcription factor bHLH104-like | ||||
Swissprot | Q8L467 | 4e-65 | BH104_ARATH; Transcription factor bHLH104 | ||||
Swissprot | Q9C682 | 3e-65 | BH115_ARATH; Transcription factor bHLH115 | ||||
TrEMBL | A0A2G5DQ27 | 1e-162 | A0A2G5DQ27_AQUCA; Uncharacterized protein (Fragment) | ||||
STRING | Aquca_017_00706.1 | 1e-163 | (Aquilegia coerulea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G51070.1 | 1e-67 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Aqcoe5G028500.1.p |