PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aqcoe5G028000.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
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Family | ERF | ||||||||
Protein Properties | Length: 142aa MW: 16204.9 Da PI: 4.8421 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 38.8 | 2.4e-12 | 10 | 55 | 2 | 54 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkle 54 y GV + +++++++eI+ + kr +lg+f t+eeAa+a+++a+ + Aqcoe5G028000.1.p 10 NYIGVQR--RNKKYASEICI------SgKRRWLGTFSTEEEAARAYDEAAYGAR 55 6899953..378*****999......44*********************98665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 1.37E-15 | 9 | 66 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 3.50E-19 | 9 | 63 | No hit | No description |
Pfam | PF00847 | 3.9E-7 | 10 | 52 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 9.9E-19 | 10 | 64 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.4E-16 | 10 | 70 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 14.539 | 10 | 64 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 142 aa Download sequence Send to blast |
MEMSITRKSN YIGVQRRNKK YASEICISGK RRWLGTFSTE EEAARAYDEA AYGARGFKAK 60 LNFSYNNILS QNLDTSLQVF SSASTIGNED AEENLFVQDD QQDNDFDDWV KYVQDNFSKK 120 KLMKWAGNLL DFLGESHGKE E* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A2G5DK87 | 1e-74 | A0A2G5DK87_AQUCA; Uncharacterized protein | ||||
STRING | Aquca_018_00164.1 | 2e-75 | (Aquilegia coerulea) |
Link Out ? help Back to Top | |
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Phytozome | Aqcoe5G028000.1.p |