PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe4G302300.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family CO-like
Protein Properties Length: 417aa    MW: 45543.7 Da    PI: 5.0347
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe4G302300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box25.52.7e-08444539
           zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                        C+ +++++++ +C+++   lC +C ++ H+       H++
  Aqcoe4G302300.1.p  4 LCDFCGQQRATVYCQSDAASLCLSCDQNVHSAnalsrrHSR 44
                       7*****************************65677777766 PP
2CCT65.71.4e-22359402144
                CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                        R+ a++RYkeK+k RkFeKkirYesRKa+A+ R+RvKGrFvk+ 
  Aqcoe4G302300.1.p 359 RDSAVMRYKEKKKARKFEKKIRYESRKARADVRKRVKGRFVKSG 402
                        899**************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003361.2E-10147IPR000315B-box-type zinc finger
PROSITE profilePS5011910.224147IPR000315B-box-type zinc finger
CDDcd000215.33E-8447No hitNo description
PfamPF006436.5E-6444IPR000315B-box-type zinc finger
PfamPF062032.8E-17359401IPR010402CCT domain
PROSITE profilePS5101715.636359401IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 417 aa     Download sequence    Send to blast
MGHLCDFCGQ QRATVYCQSD AASLCLSCDQ NVHSANALSR RHSRTLLCQK CNSQPASVRC  60
LHHQLSYCQT CDWNEHCTST SPTTHERQTV NCYLGCPSAE QLSKILSFVP DVSSANEYAC  120
EQKMGLMSID ENTVTNYLVP PESNNTVDPC VTGKRSNDGN EGQFGVWTGS SSMPTMNPLQ  180
CTQLAGTVAD STTTKPTPLG LEGLGIIEDD FCNDFNVDDV DINFENYEEL FGICQNHREQ  240
DIENGGIDNL FGMPDMSAVG SGCQGGFFTK GSLAGKDSLM QSLCRDTVSA DSAMSAKTEP  300
NFCYSAMPAH SSLSLSFSGL TGESAAGDYQ DSGVSSMLLM DEPPWFPPGP DNSFPSASRD  360
SAVMRYKEKK KARKFEKKIR YESRKARADV RKRVKGRFVK SGEAYDYDPL CQTRSC*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010245014.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 9
SwissprotQ9LUA91e-123COL10_ARATH; Zinc finger protein CONSTANS-LIKE 10
TrEMBLA0A2G5C5270.0A0A2G5C527_AQUCA; Uncharacterized protein
STRINGAquca_093_00008.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48250.16e-92B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]