PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe4G285300.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family B3
Protein Properties Length: 309aa    MW: 34377.3 Da    PI: 10.4148
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe4G285300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B347.14.1e-1550140199
                        EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                        f+ +++ps+v+   +  +pk+f+++h  ++    +++ l de+  +++ +l   + s++  l++GW  F+++++L+ gD +vF+l+g  +f 
  Aqcoe4G285300.1.p  50 FLRIMLPSHVSGGYWPGIPKDFCKDHlTLD---RIKMELIDENDVKYTSTL--IGESNG--LSGGWMAFAREHKLDKGDALVFELTGPCRF- 133
                        778999********************7444...568***************..777777..9***********************998888. PP

                        .EEEEE-S CS
                 B3  92 lvvkvfrk 99 
                         +v +f++
  Aqcoe4G285300.1.p 134 -KVYIFKA 140
                        .8888875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019365.89E-2147140IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.5E-1747140IPR015300DNA-binding pseudobarrel domain
CDDcd100174.43E-2348139No hitNo description
PfamPF023622.6E-1250140IPR003340B3 DNA binding domain
PROSITE profilePS5086311.49150141IPR003340B3 DNA binding domain
SMARTSM010191.1E-1750141IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MEKSVKTIKK APRCGKQYYK AKETTSEESD NAKNCAEKFQ ADLGDIHPSF LRIMLPSHVS  60
GGYWPGIPKD FCKDHLTLDR IKMELIDEND VKYTSTLIGE SNGLSGGWMA FAREHKLDKG  120
DALVFELTGP CRFKVYIFKA REGKQEDRSD ENECDIDTND GLESARPVKL SKVSASDDIS  180
VRKAKLSVKP KNLATVKSKT TRKTASRKAQ LDAPKAEPVA NAKATKSSSS HKTQLHTPKA  240
ETVAEPKGRK RTFSQKPQDA PKAEPVAMPK AVKSSSSTTR AKVRKPASEK LFRRKVFPDT  300
RFSFIRRE*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42700.17e-35B3 family protein