PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aqcoe4G200300.3.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
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Family | B3 | ||||||||
Protein Properties | Length: 373aa MW: 42096.2 Da PI: 10.3236 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 60.7 | 2.5e-19 | 68 | 153 | 11 | 99 |
HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 k+ r+++p++ a+e+g+k++ ++l d+ grsW v++++++ + +++lt+GW +F an+++ gD+++F++++ + l+v +fr+ Aqcoe4G200300.3.p 68 AKKYRIIIPRDLARENGLKQK--DNVVLLDPCGRSWPVTIKHQRDR-ETTLTSGWANFRVANKINIGDTCLFEFIEGLGDALRVYIFRT 153 455689**********99954..47***************554444.489*************************9966669****997 PP | |||||||
2 | B3 | 55 | 1.5e-17 | 287 | 368 | 11 | 95 |
HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SEE..EEE CS B3 11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.sefelvvk 95 +ks++lvlp +fa+++++ ++ +tl+d +g +W +i+ + ++ l +GW+ Fv +n+Lke D++ F+l+ g+ + el+v+ Aqcoe4G200300.3.p 287 SKSHNLVLPSRFAKKYMKR--APRNVTLRDIDGGTWHALYII---GAHHKLVRGWNAFVLDNHLKEDDVCNFELVdGNrNHYELKVS 368 45699***********866..5668***************44...3346799*********************88455555555555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 14.649 | 58 | 154 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 3.5E-20 | 58 | 154 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.55E-19 | 60 | 154 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 6.45E-17 | 60 | 152 | No hit | No description |
SMART | SM01019 | 1.7E-18 | 61 | 154 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 9.9E-17 | 69 | 153 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 8.1E-20 | 268 | 370 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.75E-20 | 271 | 361 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.21E-19 | 274 | 371 | No hit | No description |
SMART | SM01019 | 6.5E-13 | 276 | 371 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.197 | 277 | 372 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 5.3E-15 | 287 | 368 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 373 aa Download sequence Send to blast |
MGRSNSPSFF KFLIHDSFNE LICPEKKRDD EAVVMDKMTS LPDSKPLNAE RIEKLEATNS 60 FTVTFSPAKK YRIIIPRDLA RENGLKQKDN VVLLDPCGRS WPVTIKHQRD RETTLTSGWA 120 NFRVANKINI GDTCLFEFIE GLGDALRVYI FRTSRKAPSG KQATAGMPIS TYTPKGEIEA 180 LKRKGPRELI NDRAAKYIKE ERNPEEPQEL PSSILYSVVQ SNVSKTRMSK SAAISGRIKK 240 APTRKPLESM SSRHAAAQEK ERNIAMTAST SNKPFCSVTL RSTYVGSKSH NLVLPSRFAK 300 KYMKRAPRNV TLRDIDGGTW HALYIIGAHH KLVRGWNAFV LDNHLKEDDV CNFELVDGNR 360 NHYELKVSID RS* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A2G5E574 | 0.0 | A0A2G5E574_AQUCA; Uncharacterized protein | ||||
STRING | Aquca_011_00002.1 | 0.0 | (Aquilegia coerulea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18990.1 | 3e-11 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Aqcoe4G200300.3.p |