PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe4G191200.2.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family FAR1
Protein Properties Length: 834aa    MW: 95841 Da    PI: 7.7279
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe4G191200.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1583e-1873162291
               FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 
                        fYneYAk   Fsvrk++++    +g++ +r+f Cs+ g+r+++ ++ ++++++ r  tr++C a l++  ++  ++w v ++++eH+H lap
  Aqcoe4G191200.2.p  73 FYNEYAKFKRFSVRKDHKTVI--KGKTCRRRFICSCAGQRANKWSNlQRRRKKARRLTRCDCPALLNIVYSEeVNTWIVLDFKSEHSHVLAP 162
                        9**************997766..8889***************99995667777999***********9999889**************9975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031015.8E-1573162IPR004330FAR1 DNA binding domain
PfamPF105513.2E-32277370IPR018289MULE transposase domain
PROSITE profilePS5096610.064553591IPR007527Zinc finger, SWIM-type
SMARTSM005758.1E-5566593IPR006564Zinc finger, PMZ-type
PfamPF044341.6E-5567589IPR007527Zinc finger, SWIM-type
Gene3DG3DSA:4.10.60.109.4E-5723743IPR001878Zinc finger, CCHC-type
Gene3DG3DSA:4.10.60.109.4E-5779803IPR001878Zinc finger, CCHC-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 834 aa     Download sequence    Send to blast
MSTYNVDEFV EEFVEEFSDD SEAESEIPRR RNIDLLCQVV VRLQQEIHED MGQFSDADIL  60
DARFDTDEEA YLFYNEYAKF KRFSVRKDHK TVIKGKTCRR RFICSCAGQR ANKWSNLQRR  120
RKKARRLTRC DCPALLNIVY SEEVNTWIVL DFKSEHSHVL APTDGSQFLR SHKNECEQCI  180
IGLGVSKKKV MDLIVARAGS HAAAGCTKQD LYNQMNRSRV ERIIDGDANV VNAYMEDMSM  240
NDPGFFKKHQ VNEKQQLTKL FWSDSQSQED YKLFGDVLLF DSTYRTNRYG MPLVVFAGVN  300
NHRHTVIFAL ALMNTETIES YIWALEAFIA AMDNVAPKAV ITDGDAAIRS SIENVLPNSK  360
HRLCVWHVVQ DSLTNVRTQG FHKDFVDVMF CKGPPENFEK KWGELLTKFN NVAKKKWVHN  420
IYIKKEMWAE GYLREYFFAG CRSNQRCESI NSVVRLCVKA GLTLIELVER LLIKVNYIRH  480
RYFEAEVNTM MTRSARIPNL SGIGERAETL YTRAGYEYLY KQLLHEPSYV VNETYEDGVN  540
IKYLVNRHMY PNSPQTLENM RDTDAYKCSC KLFERVGFIC RHILALLKHT HVSQIPKSCI  600
LHRWTRDAKS SSMTDVRTNS SSWMLGSGLC LNDLEDCARE LFMWACESVQ RCSRVKSHIA  660
AFDKGESEEV AQGLNQTPIL DNPMGVEEKR ASTPTHVGLP PDNITDPPLY RGKRVVKRKI  720
WQRCTTRCGI CLIVGHTRRT CPSLLSDDEV TDHEQDEQDS PRGETMGVDA DVAKELNVRR  780
TFTCSLCKTV GHRKNAASCP MRQQSTDLAV TDMGNAYLHR EPNGSTYWSL KDD*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2G5EJ870.0A0A2G5EJ87_AQUCA; Uncharacterized protein
STRINGAquca_007_00263.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-80FAR1-related sequence 5