PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aqcoe4G156600.1.p

Organism

Aquilegia coerulea

Taxonomic ID

218851

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia

Family

Dof

Protein Properties

Length: 365aa MW: 40768.6 Da PI: 9.3893

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aqcoe4G156600.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	57	4.2e-18	22	75	5	58
zf-Dof 5 alkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrkn 58 ++cprC+s +t f yynny +q y Ck C yW + lr++ vGg r++ Aqcoe4G156600.1.p 22 PRRCPRCNSLETMFGYYNNYRDNQAGYRCKICCHYWIHEEVLRDISVGGKRKNI 75 679********************************************9865544 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	4.0E-16	23	75	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	17.429	23	77	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	1.0E-8	25	74	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 365 aa Download sequence Send to blast
MEPKREMEQQ DVGAREVRSH PPRRCPRCNS LETMFGYYNN YRDNQAGYRC KICCHYWIHE 60 EVLRDISVGG KRKNIEHSET ASSSTNHVRK IPRSVENPLL NSSSSVRINR QRDPVSRILA 120 AEGNVPSNPS SLVRFNEPRI LQASPLSPVT QSATITRGSR LSAAVSALQS ANQLLSAVSR 180 GVNRHIYPHG LRPQPQQQLY NSQNFGWSDN TMHQVSSVQQ NPTPPVLPSI SPSVLPLCFN 240 NVLGLEPVTW NSNNTQNSNY ISELRTQVTV VLRPTMVLQF QPSLYNIGSV SNPESFLLNN 300 DNNIGELQSH VNPILHSATA PVFRQRFYNV GGASDLEANL WRNNSNGIGG LPLNPNFWPD 360 QPNF*

Sequence ? help Back to Top

Protein Sequence Length: 365 aa Download sequence Send to blast

MEPKREMEQQ DVGAREVRSH PPRRCPRCNS LETMFGYYNN YRDNQAGYRC KICCHYWIHE  60
EVLRDISVGG KRKNIEHSET ASSSTNHVRK IPRSVENPLL NSSSSVRINR QRDPVSRILA  120
AEGNVPSNPS SLVRFNEPRI LQASPLSPVT QSATITRGSR LSAAVSALQS ANQLLSAVSR  180
GVNRHIYPHG LRPQPQQQLY NSQNFGWSDN TMHQVSSVQQ NPTPPVLPSI SPSVLPLCFN  240
NVLGLEPVTW NSNNTQNSNY ISELRTQVTV VLRPTMVLQF QPSLYNIGSV SNPESFLLNN  300
DNNIGELQSH VNPILHSATA PVFRQRFYNV GGASDLEANL WRNNSNGIGG LPLNPNFWPD  360
QPNF*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A2G5D078	1e-78	A0A2G5D078_AQUCA; Uncharacterized protein
STRING	Aquca_033_00060.1	2e-79	(Aquilegia coerulea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G45610.1	4e-13	Dof family protein

Link Out ? help Back to Top
Phytozome	Aqcoe4G156600.1.p