PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aqcoe4G152500.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
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Family | NAC | ||||||||
Protein Properties | Length: 347aa MW: 39048.5 Da PI: 8.3877 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 173.4 | 6.8e-54 | 15 | 142 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 lppGfrFhPtdeelvv+yLkkk+++ +l++ ++i+evd+yk++Pw+Lp+k++ +e+ewyfFs+rd+ky++g r+nra++sgyWkatg+dk++ Aqcoe4G152500.1.p 15 LPPGFRFHPTDEELVVHYLKKKASSIPLPV-TIIAEVDLYKFDPWELPEKATFGEQEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKPI 105 79****************************.89***************988899************************************** PP NAM 93 lsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 l++ ++++vg+kk Lvfy gr pkg+kt+W+mheyrl Aqcoe4G152500.1.p 106 LTSgGTQKVGVKKALVFYGGRPPKGVKTNWIMHEYRL 142 *9977788***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.7E-65 | 8 | 177 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 62.267 | 15 | 177 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.3E-28 | 16 | 142 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0045995 | Biological Process | regulation of embryonic development | ||||
GO:0048317 | Biological Process | seed morphogenesis | ||||
GO:0080060 | Biological Process | integument development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 347 aa Download sequence Send to blast |
MESTDSSGSQ QQPQLPPGFR FHPTDEELVV HYLKKKASSI PLPVTIIAEV DLYKFDPWEL 60 PEKATFGEQE WYFFSPRDRK YPNGARPNRA ATSGYWKATG TDKPILTSGG TQKVGVKKAL 120 VFYGGRPPKG VKTNWIMHEY RLADNNSNSS SMKPPMIDKK NTSLRLDEWV LCRIYKKNNS 180 QRPMDRDRED SMDDMLASIP NSTIVHQHNP RLHGLRTNYE ALVENNENFF DDLLSEDGIT 240 SNSLSQFTST SSRPDQQLNM SSSATTSGFS QKRNLPSPYW SDTVGFAPAS KRFHGVNNGD 300 GSDQISTLLN QIPQSTHFQQ QQLLGSLGEG LFRSPYQLSG MNWNTQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 8e-75 | 12 | 180 | 14 | 168 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 8e-75 | 12 | 180 | 14 | 168 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 8e-75 | 12 | 180 | 14 | 168 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 8e-75 | 12 | 180 | 14 | 168 | NO APICAL MERISTEM PROTEIN |
3swm_A | 8e-75 | 12 | 180 | 17 | 171 | NAC domain-containing protein 19 |
3swm_B | 8e-75 | 12 | 180 | 17 | 171 | NAC domain-containing protein 19 |
3swm_C | 8e-75 | 12 | 180 | 17 | 171 | NAC domain-containing protein 19 |
3swm_D | 8e-75 | 12 | 180 | 17 | 171 | NAC domain-containing protein 19 |
3swp_A | 8e-75 | 12 | 180 | 17 | 171 | NAC domain-containing protein 19 |
3swp_B | 8e-75 | 12 | 180 | 17 | 171 | NAC domain-containing protein 19 |
3swp_C | 8e-75 | 12 | 180 | 17 | 171 | NAC domain-containing protein 19 |
3swp_D | 8e-75 | 12 | 180 | 17 | 171 | NAC domain-containing protein 19 |
4dul_A | 8e-75 | 12 | 180 | 14 | 168 | NAC domain-containing protein 19 |
4dul_B | 8e-75 | 12 | 180 | 14 | 168 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor of the NAC family associated with the grain protein content (GPC). Accelerates senescence and increases nutrient remobilization from leaves to developing grains. Sequences of 11 European varieties of H.vulgare tested belongs to the same haplotype while the sequence found in H.spontaneum, an ancestor of the cultivated H.vulgare which has a higher GPC, belongs to an other haplotype. {ECO:0000269|PubMed:17124321}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00361 | DAP | Transfer from AT3G15510 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021606877.1 | 1e-163 | NAC transcription factor 56 | ||||
Swissprot | A0SPJ9 | 1e-115 | NAM2_HORVV; NAC transcription factor NAM-2 | ||||
TrEMBL | A0A2G5CE11 | 0.0 | A0A2G5CE11_AQUCA; Uncharacterized protein | ||||
STRING | Aquca_059_00027.1 | 0.0 | (Aquilegia coerulea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G15510.1 | 2e-95 | NAC domain containing protein 2 |
Link Out ? help Back to Top | |
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Phytozome | Aqcoe4G152500.1.p |
Publications ? help Back to Top | |||
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