PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aqcoe4G093300.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
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Family | Dof | ||||||||
Protein Properties | Length: 322aa MW: 35386.2 Da PI: 9.2585 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 123.1 | 9.6e-39 | 16 | 75 | 3 | 62 |
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 + lkcprCds+ntkfCyynnyslsqPr+fCkaC+ryWt+GG+lrnvPvGgg rknkk++ Aqcoe4G093300.2.p 16 QVPLKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGYRKNKKVK 75 56789****************************************************976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 4.0E-27 | 12 | 73 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 2.2E-33 | 18 | 73 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.096 | 19 | 73 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 21 | 57 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 322 aa Download sequence Send to blast |
MASSGRVMEK PVHQEQVPLK CPRCDSSNTK FCYYNNYSLS QPRHFCKACK RYWTRGGTLR 60 NVPVGGGYRK NKKVKKSGGT AGSDGSPSIS SYTHTPLPHQ MDMSTTSHIN QLLYGLPNNP 120 SFTNFPFQRF NSRNSSNGET LPTYNNHQSQ LSALGLNFPS SSTTMNREEH DYGGAGFNHT 180 NQIQDLLTSS NSILSNLSLL GSASSSYATN ASLIASSLQK QKQVWNNGFK ETRPNSNFQA 240 LLPFENLQMG GGNGDASIVM DMVKMEEGKD RNANRMEWRV PNENHMEPIG SSDSPLYWNS 300 ASSVGGWPDL TNYGSSVTPL I* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003633022.2 | 1e-101 | PREDICTED: dof zinc finger protein DOF1.4 | ||||
TrEMBL | A0A2G5CZA0 | 0.0 | A0A2G5CZA0_AQUCA; Uncharacterized protein | ||||
STRING | Aquca_033_00056.1 | 0.0 | (Aquilegia coerulea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G28310.1 | 1e-41 | Dof family protein |
Link Out ? help Back to Top | |
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Phytozome | Aqcoe4G093300.2.p |