PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aqcoe4G093200.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
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Family | SBP | ||||||||
Protein Properties | Length: 192aa MW: 20974.5 Da PI: 9.7609 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 134.2 | 4.2e-42 | 71 | 148 | 1 | 78 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cq+e+C+adl++ak+y+rrhkvCe+hskapvv+v g++qrfCqqCsrfhelsefDe+krsCrrrLa+hnerrrk+++ Aqcoe4G093200.1.p 71 CCQAEKCSADLTDAKRYYRRHKVCEHHSKAPVVIVGGVRQRFCQQCSRFHELSEFDEAKRSCRRRLAGHNERRRKNSS 148 6**************************************************************************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 1.9E-35 | 65 | 133 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 32.257 | 69 | 146 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 4.19E-39 | 70 | 150 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 9.0E-33 | 72 | 145 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010321 | Biological Process | regulation of vegetative phase change | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 192 aa Download sequence Send to blast |
MGSRVKVSLK EKGKKELVSM EEDIEDDEEI MGYGDDDKKK KVVSRRGSSG GGGGGGGVGI 60 GGGGGGVALP CCQAEKCSAD LTDAKRYYRR HKVCEHHSKA PVVIVGGVRQ RFCQQCSRFH 120 ELSEFDEAKR SCRRRLAGHN ERRRKNSSEF QGEGSSNKVA DPLKDNHCRQ VNQNGRIPLS 180 LSGNSKHFQI R* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 8e-36 | 62 | 145 | 1 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional factor. Binds to the promoter of the SQUAMOSA gene. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00634 | PBM | Transfer from PK22320.1 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010260271.1 | 6e-66 | PREDICTED: squamosa promoter-binding protein 1 | ||||
Swissprot | Q38740 | 4e-42 | SBP2_ANTMA; Squamosa promoter-binding protein 2 | ||||
TrEMBL | A0A2G5CZ99 | 1e-135 | A0A2G5CZ99_AQUCA; Uncharacterized protein | ||||
STRING | Aquca_033_00055.1 | 1e-105 | (Aquilegia coerulea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G15270.1 | 9e-41 | squamosa promoter binding protein-like 5 |
Link Out ? help Back to Top | |
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Phytozome | Aqcoe4G093200.1.p |
Publications ? help Back to Top | |||
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