PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aqcoe4G092200.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
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Family | FAR1 | ||||||||
Protein Properties | Length: 209aa MW: 24063.7 Da PI: 10.6674 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 77.5 | 2.6e-24 | 11 | 100 | 1 | 89 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHel 89 +fYn+Y ++ Fsvrks++++s+ ++it rtf+Cs +g r++++k+ ek+ r+ a +rtgCka++ ++k++ +kw vt +++ Hn l Aqcoe4G092200.1.p 11 NFYNRYVGQIKFSVRKSSTYRSRIMKKITGRTFCCSLQGLRDSKSKNFEKRMRNAADSRTGCKAMMAIRKKTgGEKWFVTIVVEAHNLIL 100 6***********************************************************************99*************665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 4.2E-20 | 11 | 98 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 209 aa Download sequence Send to blast |
MEFDSEDDAY NFYNRYVGQI KFSVRKSSTY RSRIMKKITG RTFCCSLQGL RDSKSKNFEK 60 RMRNAADSRT GCKAMMAIRK KTGGEKWFVT IVVEAHNLIL VTPTNRYLFR SQWKMEPIQN 120 KMVDDMHSVG IRTSLVVDFL ASEAGGIQNV GFTRKDVNNN LSAKHKKKLV RDAQALLDHL 180 QQQQLDNPSF SYSIQVHSKR RMTNFFLG* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 3e-23 | FAR1-related sequence 5 |
Link Out ? help Back to Top | |
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Phytozome | Aqcoe4G092200.1.p |