PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aqcoe4G078600.1.p

Organism

Aquilegia coerulea

Taxonomic ID

218851

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia

Family

HB-other

Protein Properties

Length: 1798aa MW: 200103 Da PI: 5.0349

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aqcoe4G078600.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	53.2	5.2e-17	37	92	2	57
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 kR ++ qle+Le+ + + yps++ r+eL+ klgLt+rq ++WF+ rR k++k Aqcoe4G078600.1.p 37 PKRKMKSAAQLEVLEKTYLLETYPSEALRAELSVKLGLTDRQLQMWFCHRRLKDRK 92 689999************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.9E-16	9	93	IPR009057	Homeodomain-like
SuperFamily	SSF46689	9.84E-16	21	94	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.034	33	93	IPR001356	Homeobox domain
SMART	SM00389	2.5E-16	35	97	IPR001356	Homeobox domain
Pfam	PF00046	1.3E-14	37	92	IPR001356	Homeobox domain
CDD	cd00086	8.38E-13	38	94	No hit	No description
PROSITE profile	PS50827	17.417	568	627	IPR018501	DDT domain
SMART	SM00571	5.2E-20	568	627	IPR018501	DDT domain
Pfam	PF02791	4.5E-17	569	624	IPR018501	DDT domain
Pfam	PF05066	2.0E-14	756	824	IPR007759	HB1/Asxl, restriction endonuclease HTH domain
Pfam	PF15612	4.1E-8	975	1017	IPR028942	WHIM1 domain
Pfam	PF15613	8.8E-12	1156	1226	IPR028941	WHIM2 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010228	Biological Process	vegetative to reproductive phase transition of meristem
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1798 aa Download sequence Send to blast
MESTTPDTMK KASASSSVDG AGGGGNGGGG SGGEAKPKRK MKSAAQLEVL EKTYLLETYP 60 SEALRAELSV KLGLTDRQLQ MWFCHRRLKD RKVQPMKKQK KESISSPVMV PVSGVGYDDI 120 SMGNEGGIGG GGGGGSGSGS GSSPFEPRKV VARATAAVSR IGADMPMVKR YYEPVMQPSL 180 EIRAIAFVEK QLGQHIRDDG PILGMEFDPL PPGAFGAPIA MTGQQKPAGR PYDGKMYERR 240 ESKAIKTSLR APHEYQFLPE QPSVRSEYGR GDPSHYYNSG TEVPSGRVSY STGAPYLHGK 300 EPVADYGFQG QLPSGSHPQQ GRAGHVFSSA SGEYESPHRS PFTNIGMESQ VASHPAVGLE 360 DPFLPDRQVS QEEEAVRVER KRKNDEARIA REVEAHEKRI RKELEKQDIL RRKREEQMRK 420 EMEKHDRERR KEEERLMREK LREEERFQRE QRRELERRER FLQKENLRAE KMRQKEELRK 480 EKEAARLKAA NERATARRIA KESMELIEDE RLELMDLAVA QKGLPSILSL DSDTLQNLDI 540 FRDMLSTFPP KSVKLKRPIT IRPWIDSEEN MGNLLMVYKF LITFAEVLDI WPFTLDEFIQ 600 AMHDYEPRML GEIHVALLRS IIKDIEDVAR TPSIGLGANQ NSAASPGGGH PQIVEGVAHF 660 LSAYAWGFDI RCWQRHLNPV TWPEILRQFA LSAGFGPQLK KRSPERAYYR DDNEGHDGED 720 IVCTLRNGVA AENALAVMQE KGFSQPRKSR HRLTPGTVKF AAFHVLSLEG SKGLTILEVA 780 DKIQKSGLRD LTTSKTPEAS IAAALSRDGN LFERTAPSTY CVKSAFRKDP ADAEALLSAA 840 REKIQIFENG FSDSEGEKDA DNNVVKDEDS DCDPVEDAED DDVGVAANLD EGVSHSKETK 900 SSQSIACSGN GENTPLFVTP QNGVVKDLAP FLVEGAKEVN STGSTFGQSI DNAVNCNNSS 960 NHQQEDTEID ENNSGEPWVV GLTEGEYSEL SVEERLNALV ALVGVAIEGN SIRVILEERL 1020 EAANALKKQM WAEAQLDKRR MKEDYVTKFQ YPSYTGIKTD PSPMNATVDG NQSPYAGDNK 1080 TNDASLNPTV KQEPVLELHN AQNNLNNLPT ERNLVGQELS MAPESLAQSN AFAAERSRVQ 1140 LKSYIGHKAE EMYVYRSLPL GQDRRRNRYW QFVTTATKYD PGSSRIFFES QGGCWRLIDS 1200 EEGFDALLAS LDTRGIREAH LHSMLLNVET SFKEAVRSCK KSSNYADPDR VMTTPNVSGV 1260 MLSPDCKAGI ASPSSTLCGV SVDTQDQSSS FKVELGKTQD EIKNTLIRYQ EFQDWMWKEW 1320 FHPSIFCAMK FGKKRCPELL VTCEFCHDSY FSEDNHCHVC HMTFGSFYNN SDFSDHVNLC 1380 EEKQKTGSIN RCSNSSVPLR IRLLKSQLAL VEAHIPPEAL QPLWTEDYRK SWGIKLQASS 1440 SAEELLQFVT ILEGAVKNDY LASNFETTKE LLVMTRGFTV DNSYATLPEE VPVLPWVPLT 1500 TAAVALRFME IDASISYMLQ QKVESQKDKE ASEFIKLPSR YTVAKNVQEL EQGVLDQSNH 1560 LQEDEDNWVS VGSGPNSSVR GRGLRGRGRS HNRGGRKLQR RGSGSTGGVG KKIQTRGRGR 1620 RRGRRSVRNR QISGKRIVGT GMDLGPRGVN ILPKQNTIVL PPRTSTGMDW ERDIRGLHVE 1680 DDDISNTAEA SESDDNGQAS GDEYDDQGAG YGGMFHHKSE DYMESDEEGD EEGDEDDDVD 1740 GVGDGYEEGD VDGEDDGEME LDGAQMGSEY GEEDEDDLEG NEEDEDRTSS ASSDYSQ*

Sequence ? help Back to Top

Protein Sequence Length: 1798 aa Download sequence Send to blast

MESTTPDTMK KASASSSVDG AGGGGNGGGG SGGEAKPKRK MKSAAQLEVL EKTYLLETYP  60
SEALRAELSV KLGLTDRQLQ MWFCHRRLKD RKVQPMKKQK KESISSPVMV PVSGVGYDDI  120
SMGNEGGIGG GGGGGSGSGS GSSPFEPRKV VARATAAVSR IGADMPMVKR YYEPVMQPSL  180
EIRAIAFVEK QLGQHIRDDG PILGMEFDPL PPGAFGAPIA MTGQQKPAGR PYDGKMYERR  240
ESKAIKTSLR APHEYQFLPE QPSVRSEYGR GDPSHYYNSG TEVPSGRVSY STGAPYLHGK  300
EPVADYGFQG QLPSGSHPQQ GRAGHVFSSA SGEYESPHRS PFTNIGMESQ VASHPAVGLE  360
DPFLPDRQVS QEEEAVRVER KRKNDEARIA REVEAHEKRI RKELEKQDIL RRKREEQMRK  420
EMEKHDRERR KEEERLMREK LREEERFQRE QRRELERRER FLQKENLRAE KMRQKEELRK  480
EKEAARLKAA NERATARRIA KESMELIEDE RLELMDLAVA QKGLPSILSL DSDTLQNLDI  540
FRDMLSTFPP KSVKLKRPIT IRPWIDSEEN MGNLLMVYKF LITFAEVLDI WPFTLDEFIQ  600
AMHDYEPRML GEIHVALLRS IIKDIEDVAR TPSIGLGANQ NSAASPGGGH PQIVEGVAHF  660
LSAYAWGFDI RCWQRHLNPV TWPEILRQFA LSAGFGPQLK KRSPERAYYR DDNEGHDGED  720
IVCTLRNGVA AENALAVMQE KGFSQPRKSR HRLTPGTVKF AAFHVLSLEG SKGLTILEVA  780
DKIQKSGLRD LTTSKTPEAS IAAALSRDGN LFERTAPSTY CVKSAFRKDP ADAEALLSAA  840
REKIQIFENG FSDSEGEKDA DNNVVKDEDS DCDPVEDAED DDVGVAANLD EGVSHSKETK  900
SSQSIACSGN GENTPLFVTP QNGVVKDLAP FLVEGAKEVN STGSTFGQSI DNAVNCNNSS  960
NHQQEDTEID ENNSGEPWVV GLTEGEYSEL SVEERLNALV ALVGVAIEGN SIRVILEERL  1020
EAANALKKQM WAEAQLDKRR MKEDYVTKFQ YPSYTGIKTD PSPMNATVDG NQSPYAGDNK  1080
TNDASLNPTV KQEPVLELHN AQNNLNNLPT ERNLVGQELS MAPESLAQSN AFAAERSRVQ  1140
LKSYIGHKAE EMYVYRSLPL GQDRRRNRYW QFVTTATKYD PGSSRIFFES QGGCWRLIDS  1200
EEGFDALLAS LDTRGIREAH LHSMLLNVET SFKEAVRSCK KSSNYADPDR VMTTPNVSGV  1260
MLSPDCKAGI ASPSSTLCGV SVDTQDQSSS FKVELGKTQD EIKNTLIRYQ EFQDWMWKEW  1320
FHPSIFCAMK FGKKRCPELL VTCEFCHDSY FSEDNHCHVC HMTFGSFYNN SDFSDHVNLC  1380
EEKQKTGSIN RCSNSSVPLR IRLLKSQLAL VEAHIPPEAL QPLWTEDYRK SWGIKLQASS  1440
SAEELLQFVT ILEGAVKNDY LASNFETTKE LLVMTRGFTV DNSYATLPEE VPVLPWVPLT  1500
TAAVALRFME IDASISYMLQ QKVESQKDKE ASEFIKLPSR YTVAKNVQEL EQGVLDQSNH  1560
LQEDEDNWVS VGSGPNSSVR GRGLRGRGRS HNRGGRKLQR RGSGSTGGVG KKIQTRGRGR  1620
RRGRRSVRNR QISGKRIVGT GMDLGPRGVN ILPKQNTIVL PPRTSTGMDW ERDIRGLHVE  1680
DDDISNTAEA SESDDNGQAS GDEYDDQGAG YGGMFHHKSE DYMESDEEGD EEGDEDDDVD  1740
GVGDGYEEGD VDGEDDGEME LDGAQMGSEY GEEDEDDLEG NEEDEDRTSS ASSDYSQ*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for the maintenance of the plant vegetative phase. In association with CHR11 or CHR17 may prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing, such as FT, SEP1, SEP3, AGL8/FUL, SOC1 and FLC (PubMed:22694359). Involved in the transcriptional regulation of seed-specific gene expression (PubMed:23872538). {ECO:0000269\|PubMed:22694359, ECO:0000269\|PubMed:23872538}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010260331.1	0.0	PREDICTED: homeobox-DDT domain protein RLT2 isoform X2
Swissprot	Q9FFH1	0.0	RLT2_ARATH; Homeobox-DDT domain protein RLT2
TrEMBL	A0A2G5CIV8	0.0	A0A2G5CIV8_AQUCA; Uncharacterized protein
STRING	Aquca_051_00028.1	0.0	(Aquilegia coerulea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G44180.1	0.0	Homeodomain-like transcriptional regulator

Link Out ? help Back to Top
Phytozome	Aqcoe4G078600.1.p