PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aqcoe4G069600.1.p

Organism

Aquilegia coerulea

Taxonomic ID

218851

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia

Family

GATA

Protein Properties

Length: 93aa MW: 10159.3 Da PI: 8.2107

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aqcoe4G069600.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	27	6.2e-09	57	76	1	20
GATA 1 CsnCgttkTplWRrgpdgnk 20 Cs CgttkT+ WR+gp g + Aqcoe4G069600.1.p 57 CSDCGTTKTSVWRSGPAGRS 76 ****************9976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.50.10	9.9E-7	56	76	IPR013088	Zinc finger, NHR/GATA-type
Pfam	PF00320	3.1E-6	57	76	IPR000679	Zinc finger, GATA-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 93 aa Download sequence Send to blast
MSEMNLKVIS LAAGGDVRDD QQPGQKDKKQ KEVIVIESDT DQNDHQSKTV SEYVKACSDC 60 GTTKTSVWRS GPAGRSYLQA SKERKRAARA EE*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G49300.1	9e-08	GATA transcription factor 16

Link Out ? help Back to Top
Phytozome	Aqcoe4G069600.1.p