PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe4G046300.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family FAR1
Protein Properties Length: 829aa    MW: 94979.2 Da    PI: 8.2633
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe4G046300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR162.61.2e-1970159291
               FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 
                        fYneYAk  GFsvrk++++    +g++ +r+f Cs+ g+r+++ ++ ++++++ r  tr++C a l++  ++  ++w v ++++eH+H lap
  Aqcoe4G046300.1.p  70 FYNEYAKFKGFSVRKDHKTVI--KGKTCRRRFICSCAGQRANKWSNlQRRRKKARRLTRCDCPALLNIVYSEeVNTWIVLDFKSEHSHVLAP 159
                        9**************997766..8889***************99995667777999***********9999889**************9975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.2E-1770159IPR004330FAR1 DNA binding domain
PfamPF105517.6E-33280374IPR018289MULE transposase domain
PROSITE profilePS5096610.274558594IPR007527Zinc finger, SWIM-type
SMARTSM005759.1E-5569596IPR006564Zinc finger, PMZ-type
PfamPF044341.9E-4570592IPR007527Zinc finger, SWIM-type
Gene3DG3DSA:4.10.60.101.2E-4726798IPR001878Zinc finger, CCHC-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 829 aa     Download sequence    Send to blast
MSTYNVDEFV EEFSDDDSEA ESEIPRRRNI DLLCQVGVRL QQEIHEDMGQ FSDADILDAR  60
FDTDEEAYLF YNEYAKFKGF SVRKDHKTVI KGKTCRRRFI CSCAGQRANK WSNLQRRRKK  120
ARRLTRCDCP ALLNIVYSEE VNTWIVLDFK SEHSHVLAPT DGSQFLRSHR KVSVSNALLA  180
EGLYGLGVSK KKVMDLIVAR AGSHAAAGCT KRDLYNQMNR SRVERILDGD ANVVNAYMED  240
MSMNDPGFFK KHQVNEKQQL TKLFWSDSQS QEDYKLFGDV LLFDSTYRTN RYGMPLVVFA  300
GVNNHRHTVI FALALMNTET IESYIWALEA FIAAMDNVAP KSVITDGDAA IRSSIETVLP  360
NSKHRLCVWH VVQNSLTNVR TQGFHKDFVD VMFCKGPPEN FEKKWGELLT KFNNVAKKKW  420
VHNIYLKKEM WAEGYLREYF FAGCRSNQRC ESINSVVRLC VKAGLTLIEL VERLLIKVKY  480
IRHRDFEAEV NTMMTRSAQI PNLSRIGERA EALYTRAGYE YLYKQLLHEP SYVVNETYED  540
GVNIKYLVNR HMYPNSPQTV EYMRDTDAYK CSCKLFERVG LICRHILVVL KHTHVSQIPK  600
SCILHRWTRD AKSSSMTDVR TNSSSWMLGS GLRLNDLEDC ARELFMWACE SVQRCGRVKS  660
HIAAFDKGES EEVAQGLNQT PILDNPMGVE EKRASTPTHV GLPPDNITDP PLYRGKRVAK  720
RKIWQRCTTR CGICLIVGHT RRTCPSETDP VDNMTETGET MGVDADVEKE LNVRRTFTCS  780
LCKTVGHRKN AASCPMRQQS TDLAVTDMGN AYLHREPNGS TYWSLKDD*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2G5EJ870.0A0A2G5EJ87_AQUCA; Uncharacterized protein
STRINGAquca_007_00263.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.14e-88FAR1-related sequence 5