PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aqcoe4G027300.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
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Family | HSF | ||||||||
Protein Properties | Length: 450aa MW: 51032.8 Da PI: 5.2667 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 114.5 | 7e-36 | 14 | 104 | 2 | 101 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkel 93 Fl+k+ye+++de++++++sws ++nsf+v+++ efa+++LpkyFkh+nf+SFvRQLn+YgF+k++ ++ weF+++ F +g+++l Aqcoe4G027300.1.p 14 FLTKTYEMVDDEATNSVVSWSPTNNSFIVWKTPEFARDLLPKYFKHNNFSSFVRQLNTYGFRKIDPDQ---------WEFANEDFVRGQRHL 96 9********************999*****************************************999.........*************** PP XXXXXXXX CS HSF_DNA-bind 94 lekikrkk 101 l++i+r+k Aqcoe4G027300.1.p 97 LKNIHRRK 104 ******98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46785 | 2.72E-35 | 9 | 103 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 7.4E-64 | 10 | 103 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene3D | G3DSA:1.10.10.10 | 5.3E-39 | 10 | 103 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
PRINTS | PR00056 | 3.4E-20 | 14 | 37 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 7.3E-32 | 14 | 103 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 3.4E-20 | 52 | 64 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 53 | 77 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 3.4E-20 | 65 | 77 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009408 | Biological Process | response to heat | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009958 | Biological Process | positive gravitropism | ||||
GO:0048527 | Biological Process | lateral root development | ||||
GO:0048530 | Biological Process | fruit morphogenesis | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 450 aa Download sequence Send to blast |
MEGSQGGSNS PAPFLTKTYE MVDDEATNSV VSWSPTNNSF IVWKTPEFAR DLLPKYFKHN 60 NFSSFVRQLN TYGFRKIDPD QWEFANEDFV RGQRHLLKNI HRRKPIHSHS LQNHGQGGLT 120 ESLRQELEDE IEKLKNDKAL LLLDLQRHTQ ERNGMELQVQ TLERRLHQME RHQKQMMAFL 180 AQIMQRPGFL PNLMQQSENH NKKRRLPNGD FFYEEDDIEQ NRVVPYKPAS VERPDDLPLV 240 MINTEPFEKF ELSLNCWENF LRGVGEASGE EMHGVGGKAL QTSGPIISEM HTSSGDTDMS 300 LRPQSPKLLS SSPHSKDVHS SPEVGESMCN VESPVISSLQ LSPEVRPKDL GIDVNSRPAA 360 APETESSKEQ EEGTTPSAVP PGANDDFWGQ FLTETPGASE TQEVQSERRD TAYKKNESKP 420 ANRGSFWWNM KNVDNLTEQM GQLSPAEKT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 1e-27 | 3 | 103 | 19 | 129 | Heat shock factor protein 1 |
5d5v_B | 1e-27 | 3 | 103 | 19 | 129 | Heat shock factor protein 1 |
5d5v_D | 1e-27 | 3 | 103 | 19 | 129 | Heat shock factor protein 1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010242159.1 | 0.0 | PREDICTED: heat stress transcription factor A-4b-like | ||||
TrEMBL | A0A2G5CRS5 | 0.0 | A0A2G5CRS5_AQUCA; Uncharacterized protein | ||||
STRING | Aquca_039_00029.1 | 0.0 | (Aquilegia coerulea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G45710.1 | 1e-93 | HSF family protein |
Link Out ? help Back to Top | |
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Phytozome | Aqcoe4G027300.1.p |