PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aqcoe4G024000.7.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 254aa MW: 28564.5 Da PI: 9.6466 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 97.5 | 5.7e-31 | 40 | 90 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien++nrqvtf+kRrng+lKKA+ELSvLC+aeva+i+fss+g+lyeys+ Aqcoe4G024000.7.p 40 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCEAEVALIVFSSRGRLYEYSN 90 79***********************************************95 PP | |||||||
2 | K-box | 95.7 | 7.3e-32 | 110 | 200 | 9 | 99 |
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 + +++ qqe++kL ++i +Lq+ +R+l+Ge+L++L+++eL+q+e+++e +++kiR+kKnell+++ie++qk+e +lq +nk+Lr++++ Aqcoe4G024000.7.p 110 SGSVSEANAQQEATKLCNQIASLQNHNRKLVGESLSNLNIRELKQIEKKIEGGISKIRAKKNELLFAEIEYMQKRELDLQTDNKYLRAMIA 200 3444567899*****************************************************************************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 33.613 | 32 | 92 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.8E-41 | 32 | 91 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 7.06E-33 | 33 | 106 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.03E-44 | 33 | 107 | No hit | No description |
PROSITE pattern | PS00350 | 0 | 34 | 88 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.4E-32 | 34 | 54 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 6.9E-26 | 41 | 88 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.4E-32 | 54 | 69 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.4E-32 | 69 | 90 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 1.2E-24 | 114 | 199 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 13.475 | 115 | 205 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0048366 | Biological Process | leaf development | ||||
GO:0048440 | Biological Process | carpel development | ||||
GO:0048443 | Biological Process | stamen development | ||||
GO:0048497 | Biological Process | maintenance of floral organ identity | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 254 aa Download sequence Send to blast |
MPHPSHTSIG NGCLITDFPS LAIAGDSPQR KMGRGKIEIK RIENTTNRQV TFCKRRNGLL 60 KKAYELSVLC EAEVALIVFS SRGRLYEYSN NSVKKTIERY KKACTDSTNS GSVSEANAQQ 120 EATKLCNQIA SLQNHNRKLV GESLSNLNIR ELKQIEKKIE GGISKIRAKK NELLFAEIEY 180 MQKRELDLQT DNKYLRAMIA ANERAPEHMN LMPANEYHAL SSAPFDSRNF MPANLLDHNN 240 NYSRSDQTTL QLG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1tqe_P | 2e-20 | 32 | 100 | 1 | 69 | Myocyte-specific enhancer factor 2B |
1tqe_Q | 2e-20 | 32 | 100 | 1 | 69 | Myocyte-specific enhancer factor 2B |
1tqe_R | 2e-20 | 32 | 100 | 1 | 69 | Myocyte-specific enhancer factor 2B |
1tqe_S | 2e-20 | 32 | 100 | 1 | 69 | Myocyte-specific enhancer factor 2B |
5f28_A | 2e-20 | 32 | 100 | 1 | 69 | MEF2C |
5f28_B | 2e-20 | 32 | 100 | 1 | 69 | MEF2C |
5f28_C | 2e-20 | 32 | 100 | 1 | 69 | MEF2C |
5f28_D | 2e-20 | 32 | 100 | 1 | 69 | MEF2C |
6c9l_A | 2e-20 | 32 | 100 | 1 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_B | 2e-20 | 32 | 100 | 1 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_C | 2e-20 | 32 | 100 | 1 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_D | 2e-20 | 32 | 100 | 1 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_E | 2e-20 | 32 | 100 | 1 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_F | 2e-20 | 32 | 100 | 1 | 69 | Myocyte-specific enhancer factor 2B |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00609 | ChIP-seq | Transfer from AT4G18960 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HM488113 | 0.0 | HM488113.1 Thalictrum clavatum AGAMOUS-like protein (AG-1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010656928.1 | 1e-117 | PREDICTED: MAD-box transcripion factor isoform X2 | ||||
Refseq | XP_019078770.1 | 1e-117 | PREDICTED: MAD-box transcripion factor isoform X3 | ||||
Swissprot | Q93XH4 | 1e-115 | MADS1_VITVI; Agamous-like MADS-box protein MADS1 | ||||
TrEMBL | A0A2G5C119 | 0.0 | A0A2G5C119_AQUCA; Uncharacterized protein | ||||
STRING | Aquca_136_00009.1 | 0.0 | (Aquilegia coerulea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18960.1 | 1e-94 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Phytozome | Aqcoe4G024000.7.p |
Publications ? help Back to Top | |||
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