PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe4G007100.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family TCP
Protein Properties Length: 460aa    MW: 51332.8 Da    PI: 6.9969
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe4G007100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP1241.6e-38942322135
                TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.......ssssasec..eaesssssasn 84 
                         g+kdrhsk+ T++g+RdRRvRls+++a++f+dLqd+LG+d++sk++eWL+++a  ai el+++       +      +  ++e+++s+a +
  Aqcoe4G007100.1.p  94 SGGKDRHSKVLTAKGLRDRRVRLSVSTAIQFYDLQDRLGYDQPSKAVEWLIKAAADAIAELPSLdskfpetP------TqpSDEEKRSEARF 179
                        689*************************************************************65443221......23445666666666 PP

                TCP  85 sssgkaaksaa.kskksqksaasalnlak.esrakarararertrekmriknk 135
                        ++++   ++++ +s+ s++s+ s+l+l++ e r kar+rarer ++++ ++++
  Aqcoe4G007100.1.p 180 EENDPTFPQHNaCSSTSETSKGSVLSLSRsEIRVKARERARERAAKDKDKDQQ 232
                        6666555555559999*************99***********99888877655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.2E-3695228IPR005333Transcription factor, TCP
PROSITE profilePS5136931.57796154IPR017887Transcription factor TCP subgroup
PROSITE profilePS513709.514209227IPR017888CYC/TB1, R domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009637Biological Processresponse to blue light
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
GO:1903508Biological Processpositive regulation of nucleic acid-templated transcription
GO:2000306Biological Processpositive regulation of photomorphogenesis
Sequence ? help Back to Top
Protein Sequence    Length: 460 aa     Download sequence    Send to blast
MEMEEIQQQS HNSCKMSRVG GNNIRNDSTP ITTSNLIRGV RRDNNNNNNQ YQQQDDQDDL  60
EDGVEDREKA IAVTESNRLR AWHSSRIFRV SRASGGKDRH SKVLTAKGLR DRRVRLSVST  120
AIQFYDLQDR LGYDQPSKAV EWLIKAAADA IAELPSLDSK FPETPTQPSD EEKRSEARFE  180
ENDPTFPQHN ACSSTSETSK GSVLSLSRSE IRVKARERAR ERAAKDKDKD QQIDDTHVGH  240
QQNSQNSSFT ELLTASNQRS TQNHNPSPAF FLKQARHSPP TSMDYFSPVL FGSASSSRNQ  300
FSSGFSTQSH FGVGQPTHTM TMPPSFNVTN EHHHHHHHHH PELQQFSFLP DHLIPDTPEA  360
VTDTDYNLNF SISSGLAGYN RGTLQSNSPS SQLQPHLQRF SSPADGSTMP FYIGGNANAA  420
SSNATPPENH FPAAGFDGRL HLYYGDGSSR HSDSKKEKH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A2e-23101155155Putative transcription factor PCF6
5zkt_B2e-23101155155Putative transcription factor PCF6
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00006PBMTransfer from 493022Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP3315380.0KP331538.1 Aquilegia coerulea TCP5 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010247408.11e-145PREDICTED: transcription factor TCP2-like
RefseqXP_010247409.11e-145PREDICTED: transcription factor TCP2-like
RefseqXP_010247411.11e-145PREDICTED: transcription factor TCP2-like
TrEMBLA0A2G5CG460.0A0A2G5CG46_AQUCA; TCP5
STRINGAquca_057_00119.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18390.28e-55TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2