PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aqcoe3G424400.1.p

Organism

Aquilegia coerulea

Taxonomic ID

218851

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia

Family

NAC

Protein Properties

Length: 239aa MW: 27247.4 Da PI: 4.8324

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aqcoe3G424400.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	176.3	8.5e-55	6	133	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 lppGfrFhPtdeelv++yLk+k+ g k+el ++i+e+d+yk+ePwdL k + +++ ewyfF +rd+ky++g r+nratk+gyWk+tgkd+ Aqcoe3G424400.1.p 6 LPPGFRFHPTDEELVNYYLKRKILGLKIEL-DIIPEIDLYKCEPWDLAeKsFLPSRDPEWYFFGPRDRKYPNGFRTNRATKAGYWKSTGKDR 96 79**************************.99**********84335556888****************************** PP NAM 91 evlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +v s +++++g+kktLv+y+grap+g++tdWvmheyrl Aqcoe3G424400.1.p 97 RVSS-QSRAIGMKKTLVYYRGRAPQGQRTDWVMHEYRL 133 9.999***************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	4.18E-64	4	157	IPR003441	NAC domain
PROSITE profile	PS51005	60.323	6	156	IPR003441	NAC domain
Pfam	PF02365	3.3E-30	7	133	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 239 aa Download sequence Send to blast
MSPVGLPPGF RFHPTDEELV NYYLKRKILG LKIELDIIPE IDLYKCEPWD LAEKSFLPSR 60 DPEWYFFGPR DRKYPNGFRT NRATKAGYWK STGKDRRVSS QSRAIGMKKT LVYYRGRAPQ 120 GQRTDWVMHE YRLDDKECDD PSGIQDSYAL CRVFKKNAVI SEVEEHTRSS LTFGESTSSS 180 AIIEYETMSP DVPIGSSPCM EEDDKDDAWM QFITDDAWGS SNTTNIGGED TSSVVFTN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-54	1	158	12	167	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-54	1	158	12	167	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-54	1	158	12	167	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-54	1	158	12	167	NO APICAL MERISTEM PROTEIN
4dul_A	1e-54	1	158	12	167	NAC domain-containing protein 19
4dul_B	1e-54	1	158	12	167	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor directing sieve element enucleation and cytosol degradation. Not required for formation of lytic vacuoles. Regulates, with NAC086, the transcription of NEN1, NEN2, NEN3, NEN4, RTM1, RTM2, UBP16, PLDZETA, ABCB10 and At1g26450. {ECO:0000269\|PubMed:25081480}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00363	DAP	Transfer from AT3G17730	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Regulated by the transcription factor APL (AC Q9SAK5). {ECO:0000269\|PubMed:25081480}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010270699.1	1e-146	PREDICTED: NAC domain-containing protein 45
Swissprot	A4VCM0	1e-88	NAC45_ARATH; NAC domain-containing protein 45
TrEMBL	A0A2G5F7P6	1e-177	A0A2G5F7P6_AQUCA; Uncharacterized protein
STRING	Aquca_002_01357.1	1e-178	(Aquilegia coerulea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G17730.1	1e-128	NAC domain containing protein 57

Link Out ? help Back to Top
Phytozome	Aqcoe3G424400.1.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]