PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe3G415800.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family HSF
Protein Properties Length: 424aa    MW: 47742.7 Da    PI: 5.0088
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe3G415800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind107.88.2e-34131052103
                        HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXX CS
       HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkel 93 
                        Fl + y++++d++++++isw ++ +sfv++++ +f++k+Lpky+kh+nf+SF+RQLn+YgFkk++ ++         weF+h+ F kg+k+l
  Aqcoe3G415800.1.p  13 FLLRCYDMISDPSTDTIISWGSTDTSFVIWNMITFEQKLLPKYYKHKNFSSFMRQLNLYGFKKSDPDR---------WEFTHDGFIKGQKHL 95 
                        999******************999***************************************99998.........*************** PP

                        XXXXXXXXXX CS
       HSF_DNA-bind  94 lekikrkkse 103
                        l++i rkks+
  Aqcoe3G415800.1.p  96 LKNIPRKKSS 105
                        *******997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.8E-34497IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004155.4E-449102IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467852.72E-299102IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000564.3E-151336IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004475.9E-2913102IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.3E-155163IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.3E-156476IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 424 aa     Download sequence    Send to blast
MTDSTSDKKP APFLLRCYDM ISDPSTDTII SWGSTDTSFV IWNMITFEQK LLPKYYKHKN  60
FSSFMRQLNL YGFKKSDPDR WEFTHDGFIK GQKHLLKNIP RKKSSQGNCQ VDQSQEDITS  120
TTRLSFQGTF EQNPSHENIT STRKKKPSKS KGNSQQIQKS EGNSQLIQPQ EHDTSASACV  180
EVGKFGLWEE VEILKKDKNV VMQELVKLSD HQQGADGKLH RLGQRLQGME ISQQQMLSFL  240
AMVVQSPGIL GQLLQQNENS WRISETSKKR SYLALEQDTE YNEPIDTSGQ IVKYQPLQIG  300
TPKPLLMPAP NCDESQQFDP SANGLDDFFM NIDLMPSGEG MPVPMEENGH CGAEGQFVIP  360
DFYEDGMLEN LLLGSPRLEN TAPTEPLGAL GNNVNMEFTN HGSLVEQSQT LRRLTEELGL  420
CEC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A3e-211310520123Heat shock factor protein 1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2G5F7270.0A0A2G5F727_AQUCA; Uncharacterized protein
STRINGAquca_002_01276.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32330.15e-76heat shock transcription factor A1D