PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aqcoe3G415000.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
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Family | Nin-like | ||||||||
Protein Properties | Length: 294aa MW: 32068.7 Da PI: 8.08 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 67.8 | 1.6e-21 | 22 | 67 | 3 | 48 |
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRk 48 ++++++ +sk+F++pi+dAA +Lgvc +vLK+iCR +G+ RWP+Rk Aqcoe3G415000.1.p 22 ESLTFDGISKFFNMPIADAATNLGVCSSVLKKICRDNGLVRWPYRK 67 689******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 15.221 | 7 | 91 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 7.6E-19 | 23 | 68 | IPR003035 | RWP-RK domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 294 aa Download sequence Send to blast |
MTTMSSSSTT TTQTTVTTTT IESLTFDGIS KFFNMPIADA ATNLGVCSSV LKKICRDNGL 60 VRWPYRKFLA GKSVEEIQKD AARERRREMI ELARAARQKD AATTSLYATT TILGQQGNNL 120 SQDGWQQGNN PSRDGGKQGS NPSQEGLSND MLYSGSARNL LAHLDEFKEG FPSNGLSTVT 180 MRWWGDHTSD ANDDEMLGEE SAIDGTNKQQ SHNAANKCME GKSDTTSEKS NIVPQGTALL 240 LSVRESAAAE GREALKLGVH GGYRSFKLNR REKMLLHKVF DSSLPSQWKI NSS* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010241339.1 | 1e-84 | PREDICTED: uncharacterized protein LOC104585973 isoform X1 | ||||
TrEMBL | A0A2G5CH05 | 0.0 | A0A2G5CH05_AQUCA; Uncharacterized protein | ||||
STRING | Aquca_057_00077.1 | 0.0 | (Aquilegia coerulea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G20640.2 | 6e-10 | Nin-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Aqcoe3G415000.1.p |