PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aqcoe3G406500.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
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Family | HB-other | ||||||||
Protein Properties | Length: 217aa MW: 24536.6 Da PI: 8.5121 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 55.5 | 9.4e-18 | 31 | 81 | 6 | 56 |
S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++t+eq+ Lee+F+++++p++e+ +++ lg++ +qVk+WFqN+R + k Aqcoe3G406500.1.p 31 RHTPEQIAKLEEYFNRCHNPKEEHQIAISRYLGMEPKQVKFWFQNKRNQVK 81 689********************************************9877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.51E-15 | 15 | 82 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 8.7E-11 | 25 | 87 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 8.7E-16 | 25 | 83 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 8.66E-12 | 30 | 82 | No hit | No description |
Pfam | PF00046 | 5.1E-15 | 31 | 81 | IPR001356 | Homeobox domain |
PROSITE profile | PS50071 | 13.491 | 33 | 83 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 58 | 81 | IPR017970 | Homeobox, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 217 aa Download sequence Send to blast |
MSVALGASGG GGDQPPNPAG LGKNNCNHSH RHTPEQIAKL EEYFNRCHNP KEEHQIAISR 60 YLGMEPKQVK FWFQNKRNQV KNALIRREND VFHRENERLQ SSNLALNQTC TLQWEVIRRL 120 NAENERLNME NERVRLANER MRREQVRLLE IVVNLNRELE LLRPQFANLP LNFGPAESVS 180 IPGVALGSST SSSLMNVVSR PSNADDSLNS SVMSTE* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G61150.1 | 3e-22 | homeodomain GLABROUS 1 |
Link Out ? help Back to Top | |
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Phytozome | Aqcoe3G406500.1.p |