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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Aqcoe3G406100.3.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
|
| Family |
BBR-BPC |
| Protein Properties |
Length: 289aa MW: 32047.7 Da PI: 10.0719 |
| Description |
BBR-BPC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Aqcoe3G406100.3.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GAGA_bind | 326.9 | 5.6e-100 | 1 | 288 | 1 | 301 |
GAGA_bind 1 mdddgsre.rnkgyyepaaslkenlglqlmssia.erdaki.........rernlalsekkaav.aerd.........maflqrdkalaern 71
mddd+ rn+gyyep+ lk nlglqlmss++ erd+k+ r+ + + + ++ + ++rd m+f +rd +l++
Aqcoe3G406100.3.p 1 MDDDSGLGiRNWGYYEPS--LKGNLGLQLMSSVPaERDTKPffsgrefsgRDPSAIMVSANGNYhHHRDcgipessipMDF-MRDGWLHQ-- 87
888888888*******99..*************99*************997766666666655417788************.9*******.. PP
GAGA_bind 72 kalverdnkllalllvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekk 163
++k+l++l+ + + ++ + +t+ + l++ q ds+ +++ i+ +++e+k+ kkr ++++k++k
Aqcoe3G406100.3.p 88 ------REKFLHVLPGNPN--------YSLICETSGSQPLHM---LQSPDSS--------KDERMIRMEEPEIKKDGPLKKRPGGRTQKSPK 154
......7899999995544........566667777776777...2222222........34566778888889999999888999999999 PP
GAGA_bind 164 akkkkkksekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRi 255
+kk kk +++k++++++ +r+k k+++ lv+ng+++D+s++P+PvCsCtG+++qCY+WG+GGWqSaCCtt+iSvyPLP+stkrrgaRi
Aqcoe3G406100.3.p 155 TKKSKK--AVPKDETNASV--QRAKPGKRNTALVINGIDFDISGIPIPVCSCTGIPQQCYRWGCGGWQSACCTTSISVYPLPMSTKRRGARI 242
999988..55666666666..789******************************************************************** PP
GAGA_bind 256 agrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
agrKmSqgafkk+LekLaaeGy+lsnp+DL++hWAkHGtnkfvtir
Aqcoe3G406100.3.p 243 AGRKMSQGAFKKVLEKLAAEGYNLSNPIDLRTHWAKHGTNKFVTIR 288
*********************************************8 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0009723 | Biological Process | response to ethylene |
| GO:0050793 | Biological Process | regulation of developmental process |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 289 aa
Download sequence Send
to blast |
MDDDSGLGIR NWGYYEPSLK GNLGLQLMSS VPAERDTKPF FSGREFSGRD PSAIMVSANG 60
NYHHHRDCGI PESSIPMDFM RDGWLHQREK FLHVLPGNPN YSLICETSGS QPLHMLQSPD 120
SSKDERMIRM EEPEIKKDGP LKKRPGGRTQ KSPKTKKSKK AVPKDETNAS VQRAKPGKRN 180
TALVINGIDF DISGIPIPVC SCTGIPQQCY RWGCGGWQSA CCTTSISVYP LPMSTKRRGA 240
RIAGRKMSQG AFKKVLEKLA AEGYNLSNPI DLRTHWAKHG TNKFVTIR*
|
| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 142 | 156 | KRPGGRTQKSPKTKK |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. Negatively regulates the homeotic gene AGL11/STK, which controls ovule primordium identity, by a cooperative binding to purine-rich elements present in the regulatory sequence leading to DNA conformational changes. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:15722463}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | FJ982295 | 0.0 | FJ982295.1 Aquilegia viridiflora GAGA-binding transcriptional activator (BBR/BPC1) mRNA, complete cds. |
