PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe3G395500.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family TCP
Protein Properties Length: 388aa    MW: 43546.1 Da    PI: 10.1934
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe3G395500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP130.61.5e-40822272133
                TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.......ssssaseceaesssssasnss 86 
                         gkkdrhski T++g RdRR+Rls+e+a++fFdLqd LGfdk+skt+eWLl ++++ai el +        + ss sec+ +s+  + +   
  Aqcoe3G395500.1.p  82 SGKKDRHSKIVTAQGTRDRRMRLSLEIARKFFDLQDILGFDKASKTVEWLLGKSEEAINELRKGctgetksTVSSTSECDVVSEIDERQ--- 170
                        68***********************************************************9997776665444446663333333333... PP

                TCP  87 sg..........kaaksaakskksqksaasalnlakesrakarararertrekmrik 133
                        +g          +     +k+  +  s ++ + lak+sr karararert ekm+  
  Aqcoe3G395500.1.p 171 KGltkvdekqsiDGIVLREKTTTKMLSRTTCHILAKDSRVKARARARERTLEKMSRL 227
                        223345556666555555566666666677799*********************865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.6E-4283225IPR005333Transcription factor, TCP
PROSITE profilePS5136934.3184142IPR017887Transcription factor TCP subgroup
PROSITE profilePS5137011.055206223IPR017888CYC/TB1, R domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:2000032Biological Processregulation of secondary shoot formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    Send to blast
MFTSNEFAVE NNLFFQFSPT FHEDRLYQFL SQQQQSLEKL KLSRSVEETM INKAVSNTIN  60
NINAGSFKKV NGMSGRILKK RSGKKDRHSK IVTAQGTRDR RMRLSLEIAR KFFDLQDILG  120
FDKASKTVEW LLGKSEEAIN ELRKGCTGET KSTVSSTSEC DVVSEIDERQ KGLTKVDEKQ  180
SIDGIVLREK TTTKMLSRTT CHILAKDSRV KARARARERT LEKMSRLDKS KKFPAEQVSP  240
HNLNQLKCLS SFERVDTSNR FHSNAMKSSS EVLAELEVPA SHSPKHQGPN RSFLMINSTV  300
CGPSYGFNNQ NNFATSQGVS FSNNNLPNFP ENWGVLDLSK LHSSYHGNPS IGNLQDPISS  360
SIFLTTSDVR FPSQFVASIN SGKPWDS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ4019590.0KJ401959.1 Aquilegia atrata CYC-like protein 2 (CYL2) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2G5F6J20.0A0A2G5F6J2_AQUCA; Uncharacterized protein
STRINGAquca_002_01093.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18550.25e-26TCP family protein