PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe3G378400.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family bHLH
Protein Properties Length: 551aa    MW: 60448.8 Da    PI: 6.8019
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe3G378400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH57.72.2e-18256305255
                        HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        r +h++ E+rRR++iN++f+ Lr+l+P++    ++K +Ka+ L +++eYI++Lq
  Aqcoe3G378400.1.p 256 RSKHSATEQRRRSKINDRFQILRDLIPQN----DQKRDKASFLLEVIEYIQYLQ 305
                        889*************************9....9*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.102.7E-24251327IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.66E-19253326IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.117254304IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.68E-16256308No hitNo description
PfamPF000106.5E-16256305IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.7E-13260310IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0009742Biological Processbrassinosteroid mediated signaling pathway
GO:1902448Biological Processpositive regulation of shade avoidance
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 551 aa     Download sequence    Send to blast
MELPQPRPIG NEGKKPTHDF LSLYSHSSFP DPRPSQGNGL RTHDFLQPLE RVAKNNVVGE  60
KLVDRTKGEN PSPSSSSSPS VEHILPGGIG TYTISHISNF SQRVPKTEQA IGTVVRGSSA  120
ERSGEINIAN SSTNGGVFAF WEESTVKDKG KKVNIVEAQV AREQSEKLGQ WSSERPLQTP  180
SPTPPPSFLH CNSFNSLSSS KQSIKSQSSF MEMMKSGRGL QEEEDDDDEE YANSSKKSSS  240
SQKDGKSGDQ KANTPRSKHS ATEQRRRSKI NDRFQILRDL IPQNDQKRDK ASFLLEVIEY  300
IQYLQEKVNR YEVSYQGWNQ EPTKLTPWRN GHAPSESMAD HSQTLKSGPS LMFTGKFDDN  360
TIPNPTILAT TQSPVDPGMS TSATYKTMDH HAEGSQKSGP MPIPVQPNIF VPAVQHQQQS  420
ISEVENMVPQ PQAQLWPNRP CTTQCPDASD TLNEHEDLAI EGGTISLAGV YSQGLLNNLT  480
QALQSSGVDL SQASVSVQVD IGKRATNRLN AMASGVKHDG NPCSNRAMAH SRVESSGEDS  540
DQARKRLRTE *
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00498DAPTransfer from AT5G08130Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019053981.10.0PREDICTED: transcription factor BIM2 isoform X1
RefseqXP_019053984.10.0PREDICTED: transcription factor BIM2 isoform X1
RefseqXP_019053986.10.0PREDICTED: transcription factor BIM2 isoform X1
TrEMBLA0A2G5F5L70.0A0A2G5F5L7_AQUCA; Uncharacterized protein
STRINGAquca_002_00952.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08130.43e-81bHLH family protein