PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aqcoe3G378000.1.p

Organism

Aquilegia coerulea

Taxonomic ID

218851

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia

Family

Dof

Protein Properties

Length: 307aa MW: 34485.9 Da PI: 7.5248

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aqcoe3G378000.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	123.1	9.6e-39	30	89	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +++alkcprCds ntkfCyynny+lsqPr+fCk+CrryWtkGG lrnvPvGgg+rk k+s Aqcoe3G378000.1.p 30 PNQALKCPRCDSLNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGVLRNVPVGGGCRKTKRS 89 57899****************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	4.3E-33	32	88	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	3.0E-27	32	88	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.674	34	88	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	36	72	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 307 aa Download sequence Send to blast
MQDFRSISMP SGAGNGGRFF GGERRLRPYP NQALKCPRCD SLNTKFCYYN NYNLSQPRHF 60 CKNCRRYWTK GGVLRNVPVG GGCRKTKRSK PKASSDHHKE RKSSNSHSSS ESSSLTATTA 120 TPTTTATTTP TNEVAACSSS VPAGLLNFPD SRLFMNQANE NTNFEPHMLE NIDQQSSDGG 180 IFAENGSFTS LMNVSNQYNF SEISPFQHHQ QQQQQQQQQE LVELQQQKLK MVEEMKMQEL 240 TTGCIDHQTV GINLSGLQNR NNNGELTTID WQSNGDHGLF DLPNTVDQGY WSQNQWTDND 300 QHLYLP*

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00570	DAP	Transfer from AT5G60850	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019053420.1	1e-104	PREDICTED: dof zinc finger protein DOF5.4
TrEMBL	A0A2G5F5K9	0.0	A0A2G5F5K9_AQUCA; Uncharacterized protein
STRING	Aquca_002_00949.1	0.0	(Aquilegia coerulea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60850.1	2e-51	OBF binding protein 4

Link Out ? help Back to Top
Phytozome	Aqcoe3G378000.1.p