PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe3G375100.4.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family C2H2
Protein Properties Length: 233aa    MW: 26912.5 Da    PI: 7.9266
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe3G375100.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.17.4e-062246123
                       EEET..TTTEEESSHHHHHHHHHHT CS
            zf-C2H2  1 ykCp..dCgksFsrksnLkrHirtH 23
                       ++Cp   Cgk+F+  s L++H  +H
  Aqcoe3G375100.4.p 22 HVCPevGCGKVFKYASRLRHHEESH 46
                       79*******************9988 PP
2zf-C2H215.45.4e-05113137223
                        EET..TTTEEESSHHHHHHHHHH.T CS
            zf-C2H2   2 kCp..dCgksFsrksnLkrHirt.H 23 
                        kC+   C  +F+ ksnL++Hi+  H
  Aqcoe3G375100.4.p 113 KCSykGCLHTFTKKSNLNQHIKAvH 137
                        688889***************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.1E-71746IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.85E-51848No hitNo description
SMARTSM003550.00252246IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.5122251IPR007087Zinc finger, C2H2
PROSITE patternPS0002802446IPR007087Zinc finger, C2H2
SMARTSM003554.95479IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.608.5E-45576IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS0002805679IPR007087Zinc finger, C2H2
SMARTSM003552182103IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.04E-794154No hitNo description
Gene3DG3DSA:3.30.160.601.8E-595134IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0062112137IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.489112142IPR007087Zinc finger, C2H2
PROSITE patternPS000280114137IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.1E-4136163IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003552.3143169IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.58143169IPR007087Zinc finger, C2H2
PROSITE patternPS000280145169IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MRRHVLEFHD ETDYDNESQK QHVCPEVGCG KVFKYASRLR HHEESHVKPD SIEAICCEPG  60
CMKSFSNAEC LKAHLLSCHQ YIECEVCGTQ QLRKNIKRHM HIHEGGCALE RIKCSYKGCL  120
HTFTKKSNLN QHIKAVHLEL RPFACRFAGC GKTFPYRHVR DNHENSGIHV YFQGDFEEAD  180
EQFRSRPRGG CKRKCPTIEM LLRKRVTLPG QVDSAWSQAS DYFNWLLSES DD*
Functional Description ? help Back to Top
Source Description
UniProtEssential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010251838.11e-111PREDICTED: transcription factor IIIA
RefseqXP_010251839.11e-111PREDICTED: transcription factor IIIA
RefseqXP_010251840.11e-111PREDICTED: transcription factor IIIA
RefseqXP_010251841.11e-111PREDICTED: transcription factor IIIA
SwissprotQ84MZ43e-80TF3A_ARATH; Transcription factor IIIA
TrEMBLA0A2G5F5L11e-173A0A2G5F5L1_AQUCA; Uncharacterized protein
STRINGAquca_002_00921.11e-173(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.12e-83transcription factor IIIA